Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00572 ATGGAAGATCAACAGTTGAAACTGCCACCTGGCTTTAGATTTCATCCAATAGATGAGGAGCTCATAAATGATTACCTCTTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAACAATTGATGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTAGGTTTGATAATATGGGTAAAACAGAATGGTACTTTTTTAATGTGAGGGTTAGAAAATACCCAACTGGTTTAAGGACAAATAGAGACACTGATGCTGGCTACTGGAAGGCCACGGGCAAAGAAAAGGAGATATTCGCGGCAAATGCATTGATTGAGGTGAAGTAA 327 0.3884 MEDQQLKLPPGFRFHPIDEELINDYLFKKVVDNSFCAITIDEVDLNKCEPWDFPRFDNMGKTEWYFFNVRVRKYPTGLRTNRDTDAGYWKATGKEKEIFAANALIEVK. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00572 108 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 106 - -
Seca2g00572 108 Gene3D NAC domain 17 108 IPR036093 GO:0003677|GO:0006355
Seca2g00572 108 ProSiteProfiles NAC domain profile. 8 108 IPR003441 GO:0003677|GO:0006355
Seca2g00572 108 Pfam No apical meristem (NAM) protein 9 100 IPR003441 GO:0003677|GO:0006355
Seca2g00572 108 SUPERFAMILY NAC domain 5 105 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00572 Seca-Chr2 8105543 8105970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00572 2 108 NAC Transcription Factor Family AT3G29035 64.486 1.19e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g00572 NAM 4.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00572 - - gmx:100782172 170.244