Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00571 ATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGACGAACCATCACCTTCTTCTCAATTGCTTCCATTAACGGATTTTTCTCCATACAACAACATAACAAGAACAACTACAGGTTATTTGTCTCAAATGATCAACTTCTCCTATCCAAATCAAATAGAGTATCAGAGTGCACAAGATGGCATTGTTGATAGCATGGAAGCTCTTATCTTAGACTTATCTTCAGGACCCTATGTCATTTCCCCTTATGCTAAACAAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCACCGTAGTATCCTGATTATTCTCCGCCTCAAGAAAAACCCAAGGATGAGATCAGTGGAGAATTTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGCTTTAGATTTCATCCAATAGATGAGGAGCTCATAAATGATTACCTCTTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAACAATTGATGAAGTTGATTTGAACAAGTGGTTTGCTAATAAAGGTGAAACAGAATGGTACTTTTTTAATGTTAGGAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTTCTTGTGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCTCCTCCTTCTCAATTGCTTCCAATGATGGATTTTTATCCATACAACAACATAACAAGAACAACTGCGGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCATGCATTCTCCAACCATTCCACAATGGTTGCACAACAAATTGCCAACCACAGTATCCTGATTATTCTCTGCCTCAAGAACAACAAAAGTTAA 873 0.3849 MHVPNFGRFNTFGDEPSPSSQLLPLTDFSPYNNITRTTTGYLSQMINFSYPNQIEYQSAQDGIVDSMEALILDLSSGPYVISPYAKQTPAFSNHSTMIAQQIGHRSILIILRLKKNPRMRSVENLSRPRMEDQQLKLPPGFRFHPIDEELINDYLFKKVVDNSFCAITIDEVDLNKWFANKGETEWYFFNVRREWVISRVFEKSSCVKKMHVPNFGRFNTFGEEPSPPSQLLPMMDFYPYNNITRTTAGPYDISPYAKPTHAFSNHSTMVAQQIANHSILIILCLKNNKS. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00571 290 ProSiteProfiles NAC domain profile. 137 277 IPR003441 GO:0003677|GO:0006355
Seca2g00571 290 Pfam No apical meristem (NAM) protein 138 193 IPR003441 GO:0003677|GO:0006355
Seca2g00571 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 134 192 - -
Seca2g00571 290 SUPERFAMILY NAC domain 133 194 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00571 Seca-Chr2 8101940 8105275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00571 124 192 NAC Transcription Factor Family AT3G15170 55.263 4.63e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g00571 NAM 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00571 - - gmx:100782172 103.99