Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00570 ATGGAAGATCAACAGTTGAAACTGCCACCTGGCTTTAGATTTCATCCAATAGATGAGGAGCTCATAAATGATTACCTCTTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAACAATTGATGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTAGGTTTGCTAATAAAGGTGAAACAGAATGGTACTTTTTTAATGTGAGGAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTTCTTGTGTAAAGAAAATGCATGTTCCAAACTATGGAAGGTTCAACACCTTTGGAGAGGAACCATCTCCTCCTTCTCAATTGCTTCCAATGATGGATTTTTATCCATACAACAACATAACAAGAACAACTGCAGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCATGCATTCTCCAACCATTCCACAATGGTTGCACAACAAATTGCCAACCACAGGATGAGATCAGTGGAGAATTTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGCTTTAGATTTCATCCAATAGATGAGGAGCTCATAAATGATTACCTCTTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAACAATTGATGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTAGGTTTGCTAATAAAGGTGAAACAGAATGGTACTTTTTTAATGTGAGGAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTTCTTGTGTAAAGAAAATGCATGTTCCAAACTATGGAAGGTTCAACACCTTTGGAGAGGAACCATCTCCTCCTTCTCAATTGCTTCCAATGATGGATTTTTATCCATACAACAACATAACAAGAACAACTGCAGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCATGCATTCTCCAACCATTCCACAATGGTTGCACAACAAATTGCCAACCACAATTTTACTGCAGGGATGAGATCAGTGGAGAATTTGTCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGCTTTAGATTTCATCCAATAGATGAGGAGCTCATAAATGATTACCTCTTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAACAATTGATGAAGTTAATTTGAACAAGTGTGAGCCATGGGATTTTCCTAGGTTTGCTAATATGGGTGAGACACAACAGTACTTTTTTAATGTGAGGGATATAAAATACCCAAATGGTTTAAGGACAAATAGAGTCACTAATGCTGGCTACTGGAAGGCCACAAGCAAAGACAGGGAGATATTCGTGGCAAATGCATTGATTGGGGTGAAGAAAACACTAGTTTTCTACCAAGGAAGAGCTCCAAAAGGTAGAAAAACCAACTGGATAATGCATGAATATAGATTGGAGGGTAAAAATTCTGAATATAATCTCTCTAGACTTGAAAAGAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTACTTGTGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCGTCACCTACTTCTCCATTGCTCCCATTGACAGATTTTTCTCCATAA 1599 0.3815 MEDQQLKLPPGFRFHPIDEELINDYLFKKVVDNSFCAITIDEVDLNKCEPWDFPRFANKGETEWYFFNVRREWVISRVFEKSSCVKKMHVPNYGRFNTFGEEPSPPSQLLPMMDFYPYNNITRTTAGPYDISPYAKPTHAFSNHSTMVAQQIANHRMRSVENLSRPRMEDQQLKLPPGFRFHPIDEELINDYLFKKVVDNSFCAITIDEVDLNKCEPWDFPRFANKGETEWYFFNVRREWVISRVFEKSSCVKKMHVPNYGRFNTFGEEPSPPSQLLPMMDFYPYNNITRTTAGPYDISPYAKPTHAFSNHSTMVAQQIANHNFTAGMRSVENLSRPRMEDQQLKLPPGFRFHPIDEELINDYLFKKVVDNSFCAITIDEVNLNKCEPWDFPRFANMGETQQYFFNVRDIKYPNGLRTNRVTNAGYWKATSKDREIFVANALIGVKKTLVFYQGRAPKGRKTNWIMHEYRLEGKNSEYNLSRLEKREWVISRVFEKSTCVKKMHVPNFGRFNTFGEEPSPTSPLLPLTDFSP. 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00570 532 ProSiteProfiles NAC domain profile. 8 155 IPR003441 GO:0003677|GO:0006355
Seca2g00570 532 Pfam No apical meristem (NAM) protein 176 239 IPR003441 GO:0003677|GO:0006355
Seca2g00570 532 Pfam No apical meristem (NAM) protein 9 72 IPR003441 GO:0003677|GO:0006355
Seca2g00570 532 Pfam No apical meristem (NAM) protein 347 471 IPR003441 GO:0003677|GO:0006355
Seca2g00570 532 SUPERFAMILY NAC domain 5 72 IPR036093 GO:0003677|GO:0006355
Seca2g00570 532 SUPERFAMILY NAC domain 171 239 IPR036093 GO:0003677|GO:0006355
Seca2g00570 532 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 172 237 - -
Seca2g00570 532 ProSiteProfiles NAC domain profile. 346 496 IPR003441 GO:0003677|GO:0006355
Seca2g00570 532 ProSiteProfiles NAC domain profile. 175 322 IPR003441 GO:0003677|GO:0006355
Seca2g00570 532 FunFam NAC domain-containing protein 100-like 355 500 - -
Seca2g00570 532 Gene3D NAC domain 355 500 IPR036093 GO:0003677|GO:0006355
Seca2g00570 532 Gene3D NAC domain 184 241 IPR036093 GO:0003677|GO:0006355
Seca2g00570 532 Gene3D NAC domain 17 74 IPR036093 GO:0003677|GO:0006355
Seca2g00570 532 SUPERFAMILY NAC domain 342 496 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00570 Seca-Chr2 8089202 8096023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00570 6 70 NAC Transcription Factor Family AT5G07680 66.154 1.89e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g00570 NAM 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00570 - - gmx:100790888 275.789