Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00569 ATGGGACGATCACCATGCTGTGACAAGGTTGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAAAAGCTCTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCCTCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACCAATTATCTAAGGCCTGATATTAAGAGAGGAAAATTCAGTTTGCAAGAAGAACAAACCATCATTCAGCTCCATGCACTCTTAGGGAACAGGTGGTCTGCAATAGCCACACATTTACCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCTGTGACCCACAAGCCTAAGAATGATGCCCTTCTCTCTAGTGATGGCCATTCCAACAAAAGTGCAGCCAACCTTAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAGGCTGAAGCAAGATTGGTAAGAGAATCCAAATTACGTTCACATTCATTGCAGCAGCATCACCACCACCTTGGAATAAGTCCTGCTTTTCCACCATCATCATCCTCCTCTGCATCAACATCATCATCTTCAGCTTCACTACTCAACAAACCAGATATCAATGCAATCAAAGCTTGGAACTTTAAATCTAATGAAGGAAATGGGGTTAGTGGTGACCTTGAGTCTCCTACATCTACACTATCATTCTCAGAGAATAACAATAATGGTAACACCATTCCACCAATTATGACAAGTAGTGGACTTGGGGAAAACACAGTGCATATGATTGAGTTTGTGGGTTCTTCTTCAGAGAGAGGAATTGTGAAAGAAGAAGGTGATCAACAAGAGTGGAAAGGCTATGAAAGCTCAACCCATCTTGCAGAATACAAAGATGGCATGGAAAATTCAATGCCTTTTACGTCTACACTGCATGAGCTGACAATGACCACAATGGAAACCACGTGGGTTTCTGCTACAGAGTCTCTTAGGACCACAACTACTAATAGTGCACATGTCTCTGTTCCTGAGGAAGGGTTCACCAATCTCTTGCTGAATACTAACTCTGATGAGAGGAGTTTGTCACCGGAGGGTGGTGGAGAGTCTAATAATAACTGTGGCAGTGAATTCTATGAAGATAACAAGAACTACTGGAATAGCATTCTTAACTTAGTGAACTCTTCCCCTTCTGATTCACCCATGTTCTGA 1218 0.4294 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGHSNKSAANLSHMAQWESARLEAEARLVRESKLRSHSLQQHHHHLGISPAFPPSSSSSASTSSSSASLLNKPDINAIKAWNFKSNEGNGVSGDLESPTSTLSFSENNNNGNTIPPIMTSSGLGENTVHMIEFVGSSSERGIVKEEGDQQEWKGYESSTHLAEYKDGMENSMPFTSTLHELTMTTMETTWVSATESLRTTTTNSAHVSVPEEGFTNLLLNTNSDERSLSPEGGGESNNNCGSEFYEDNKNYWNSILNLVNSSPSDSPMF. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00569 405 MobiDBLite consensus disorder prediction 122 141 - -
Seca2g00569 405 MobiDBLite consensus disorder prediction 222 248 - -
Seca2g00569 405 MobiDBLite consensus disorder prediction 187 204 - -
Seca2g00569 405 CDD SANT 69 112 IPR001005 -
Seca2g00569 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g00569 405 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca2g00569 405 CDD SANT 16 61 IPR001005 -
Seca2g00569 405 SMART sant 13 63 IPR001005 -
Seca2g00569 405 SMART sant 66 114 IPR001005 -
Seca2g00569 405 MobiDBLite consensus disorder prediction 358 378 - -
Seca2g00569 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g00569 405 FunFam MYB-related transcription factor 13 66 - -
Seca2g00569 405 Gene3D - 13 66 - -
Seca2g00569 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca2g00569 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca2g00569 405 Gene3D - 69 116 - -
Seca2g00569 405 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca2g00569 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g00569 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Seca2g00569 405 MobiDBLite consensus disorder prediction 169 204 - -
Seca2g00569 405 FunFam MYB transcription factor 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00569 Seca-Chr2 8065346 8067646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00569 348 405 MYB Transcription Factor Family AT3G01140 58.730 1.80e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g00569 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00569 K09422 - cave:132181307 521.546