Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00567 ATGGAGTTTGCATCAATTGAAGATGCAAAGAATTACTATACAAGGTACGCCAAGAATAGAGGTTTTAGCTTTCGTATGGGTCGTATTACTAAATCAAGAACAAATGGTATGATGATCGGTCAAGAGATCGTTTGTTCAAAGGAGGGATTTCGGCGAAAAAAAGATATGGGAATGGAACATAAAAGCCTTGCACATGATGAAACAAGGGTAGGATGCAAAGCAATGTTATATATAAAGAAAAATGAGGATAGATGGCTTGTTTCTAGATTTGTAAGAGATCATAATCATGAACTATTTTCCCCAAGAAGCTCACAGTTTCTTCGAGTGCATAGAAAGAAAACTCAAGTGCAAAAGAAACTTATTGATGTGCTTGATGATTCTGGTTTGCAGCCTAGTAAAATAACATCTGTCTTGTGTACTGAAAGTGGTGGTATTGATAATGTTGGATTTAGTCAACAAAATGTTATTGATTACTTAAGTGCAAGGAGACAAAAACAATTAGAAAAAGGAGATGCTCAGTTGATGTTATCATATTTTAAGAATTGCCAATCGAAGAATACTGGGTTTTTTTTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGTTAAGCACTTGGTTAGAAGCAATGGGTGGAGTTTCTCCTAAAACTATTATCACAGATCAAGACGCTGCCATCACTAATGCAGTTGCAAGGGTATTTCCAAAGGTCAATCATCATTATTGCATGTGGCACATTGAGAAAAAGGTACAGGAGTACTTGAACTATATCTATCATGAACACAGTGAGTTTAAAAATCAATTTTACAAGTGCATTCACCAATTTGTTAGTATTGAAGATTTTGAATCTGATTGGGAAGCAATGATAGATAAATATGGGTTGCAGGATAATCAGTGGCTAAAGAAAATATACTTTGTTCGAAACAAATGGATTCCTGCTTATGTACGACATAATTTTTGTGCCGGAATGTCTACCACCCAAAGGAGTGAAAGCATGAATAAATTCTTTAAGGATTTTTTGAATTCAAGCACTCCATTAAGCAAGTTTGTTACACAATATGAGAGAGCTCTTGATGCACGTTATAACAAGGAAAGGGAGAAGACTTTCAAGACAATGAATTCAAAACCATTTTTGCGAACATTATATCCCATGGAAGAAGAAGCTTCAAAAATTTATACAAGAAAATTGTTTAGGATATTTCAAGATGAATTGGTTGGCTCTCAATTGTTTACTGCAGAGAAAGTTGGATTTTCCACTGAAGTGTCCACATACAAGGTTCATGAAATTTTAAAAGAGAAACCTAACTATTATGTGGATTTTCATGTTATTTCAAAAGAAGCAAGTTGTGGATGTCACATGTTTGAATTTTTGGGCATTCTTTGTAGACATGTATTAGCTGTATTCATAAAGAAAAAGGTCTATTCTCTCCCTTCAAGGTATATTCTATGTCGATGGACCATTAATGCTAAGAAAGAGAAAGTTAAAGGATTGGAAAGTGATGAATTCCAAGAAGGCGACAACAAAGCTTCTAGTACATTATTGTTTAATAGTGTTATGGTTCAATCTCTTGAACTATCTGAAAGAGCTTCACGGTCAGAAAAGCATCATGATGTTGCAATTCAAGGTTTACAAAAGTTAATTGAAGAGCTTGATCTACTAGAAGTTGAAGAGTCAAAGGAAGAGCATGGTAATTCAACAACTCAAGTTATGCCGAAAGTCTCCAACAATGATATAACTTTGCGTGATCCTCCACTTGTGGCAACTAAAAGGCGTCCACGAACTTTGCGAATGAAAGGCAACTTAGAATTGATCAAGAAAGGTTCCTCTACTTGTAGTTATTGTAAGAAAAAAGGCCATAACAAACGTAAATGTCCAAGTTTAAATCAAGCAAGGTATCTTACAAACACACATTACCCAATTTATTTTTATGATTCCTGCCCTTCAGTCCTTTTCCCTTTGCTCTGTTTTTCATTTTTACTGTGCTAA 1986 0.3479 MEFASIEDAKNYYTRYAKNRGFSFRMGRITKSRTNGMMIGQEIVCSKEGFRRKKDMGMEHKSLAHDETRVGCKAMLYIKKNEDRWLVSRFVRDHNHELFSPRSSQFLRVHRKKTQVQKKLIDVLDDSGLQPSKITSVLCTESGGIDNVGFSQQNVIDYLSARRQKQLEKGDAQLMLSYFKNCQSKNTGFFLWDETEESFVWLLSTWLEAMGGVSPKTIITDQDAAITNAVARVFPKVNHHYCMWHIEKKVQEYLNYIYHEHSEFKNQFYKCIHQFVSIEDFESDWEAMIDKYGLQDNQWLKKIYFVRNKWIPAYVRHNFCAGMSTTQRSESMNKFFKDFLNSSTPLSKFVTQYERALDARYNKEREKTFKTMNSKPFLRTLYPMEEEASKIYTRKLFRIFQDELVGSQLFTAEKVGFSTEVSTYKVHEILKEKPNYYVDFHVISKEASCGCHMFEFLGILCRHVLAVFIKKKVYSLPSRYILCRWTINAKKEKVKGLESDEFQEGDNKASSTLLFNSVMVQSLELSERASRSEKHHDVAIQGLQKLIEELDLLEVEESKEEHGNSTTQVMPKVSNNDITLRDPPLVATKRRPRTLRMKGNLELIKKGSSTCSYCKKKGHNKRKCPSLNQARYLTNTHYPIYFYDSCPSVLFPLLCFSFLLC. 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00567 661 Pfam SWIM zinc finger 445 471 IPR007527 GO:0008270
Seca2g00567 661 Pfam FAR1 DNA-binding domain 11 99 IPR004330 -
Seca2g00567 661 ProSiteProfiles Zinc finger SWIM-type profile. 436 472 IPR007527 GO:0008270
Seca2g00567 661 Gene3D - 587 633 - -
Seca2g00567 661 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 549 IPR031052 GO:0006355
Seca2g00567 661 SUPERFAMILY Retrovirus zinc finger-like domains 605 629 IPR036875 GO:0003676|GO:0008270
Seca2g00567 661 Pfam MULE transposase domain 187 249 IPR018289 -
Seca2g00567 661 SMART 26again6 447 474 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00567 Seca-Chr2 8032022 8034206 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g00567 FAR1 6.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00567 - - itr:116005830 733.791