Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00563 ATGGAAGGATCACAAGGTGTGAGGAAAGGCGCATGGAGTAAATTTGAAGATGATCTTCTCAAAGCATGTGTCCAACAATATGGAGAGGGAAAATGGCACCTAGTTCCTCAAAGAACAAGTGTAGGGTTGAATAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAATTACCTAAAACCAAATATCAAGAGGGGAGATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTGATAGCTGGAAGACTTCCTGGAAGAACTGCAAATGATGTGAAAAATTACTGGAACACTCACATGCGCAGTAAAGTAGACTCACAGGCACATAGCAAGAAAGAAGACAAGCAAGAAGAGACTGAAAGAGTGAAACCCCACGAAGTGATAAAGCCTGTGCCTCGAACTTTGTCAAAAGCATCTTCACAAGGGAAACTCAATATTTTTGCTTCTGCAGATCAGAGTGATAGTTGCAAAGTTAATATAATTAGCAGTGAAGGAGCTTCTTCATCAGGGAAGAATTGGTGGGAAACTTTGTAG 561 0.4082 MEGSQGVRKGAWSKFEDDLLKACVQQYGEGKWHLVPQRTSVGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHMRSKVDSQAHSKKEDKQEETERVKPHEVIKPVPRTLSKASSQGKLNIFASADQSDSCKVNIISSEGASSSGKNWWETL. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00563 186 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Seca2g00563 186 FunFam Transcription factor MYB113 66 136 - -
Seca2g00563 186 MobiDBLite consensus disorder prediction 113 136 - -
Seca2g00563 186 CDD SANT 67 109 IPR001005 -
Seca2g00563 186 CDD SANT 11 58 IPR001005 -
Seca2g00563 186 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 158 - -
Seca2g00563 186 MobiDBLite consensus disorder prediction 110 136 - -
Seca2g00563 186 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Seca2g00563 186 FunFam Myb transcription factor 9 63 - -
Seca2g00563 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Seca2g00563 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 58 IPR017930 -
Seca2g00563 186 Pfam Myb-like DNA-binding domain 9 58 IPR001005 -
Seca2g00563 186 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Seca2g00563 186 Gene3D - 65 138 - -
Seca2g00563 186 Gene3D - 9 63 - -
Seca2g00563 186 SUPERFAMILY Homeodomain-like 6 105 IPR009057 -
Seca2g00563 186 SMART sant 63 111 IPR001005 -
Seca2g00563 186 SMART sant 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00563 Seca-Chr2 7902012 7904316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00563 2 160 MYB Transcription Factor Family AT1G66370 58.896 4.58e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g00563 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00563 - K16166 gmx:100781091 255.758