Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00562 ATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTGATTGCTGGAAGACTTCCTGGAAGAACTCCAAACGATGTGAAAAATTACTGGAACACCCACATGCGCAGTAAATTAGTAGACTCACAGGCACATAGCAAGAAAGAAGACAAGCAAGAGACTGAAAGAGTGAAACCCCACGAAGTGATAAAGCCTTAG 198 0.4293 MIRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTHMRSKLVDSQAHSKKEDKQETERVKPHEVIKP. 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00562 65 Gene3D - 1 63 - -
Seca2g00562 65 SUPERFAMILY Homeodomain-like 2 44 IPR009057 -
Seca2g00562 65 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 54 - -
Seca2g00562 65 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 39 IPR017930 -
Seca2g00562 65 ProSiteProfiles Myb-like domain profile. 1 35 IPR001005 -
Seca2g00562 65 Pfam Myb-like DNA-binding domain 2 34 IPR001005 -
Seca2g00562 65 CDD SANT 2 35 IPR001005 -
Seca2g00562 65 SMART sant 2 37 IPR001005 -
Seca2g00562 65 MobiDBLite consensus disorder prediction 40 65 - -
Seca2g00562 65 MobiDBLite consensus disorder prediction 37 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00562 Seca-Chr2 7887967 7890942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00562 1 62 MYB Transcription Factor Family AT4G38620 51.515 4.14e-19 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca2g00562 Myb_DNA-binding 9.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00562 - K16166 tpra:123921946 98.2117