Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00558 ATGGAAGGATCACAAGGTGTGAGGAAAGGCGCATGGAGTAAATTTGAAGATGATCTTCTCAAAGCATGTGTCCAACAATTTGGGGAGGGAAAATGGCACCTAGTTCCTCAAAGAACAAATATGTGTGTAGGGTTGAATAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAATTACCTAAAACCAAATATCAAGAGGGGAGATTTTAGTGAAGATGAGGTTGATTTGATGTTCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTGATAGCTGGAAGACTTCCTGGAAGAACTGCAAATGATGTGAAAAATTACTGGAACACCCACATGCGCAGTAAAGTAGTAGACTCACAGGCACATAGCAAGAAAGAAGACAAGCAAGAGACTGAAATAAGAGTGAAACCCCAGGAAGTGATAAAGCCTCTGCCTCGAACTTTCTCAAAAGCATCTTCACAAGGGAAACTCATTATTGCCTCAACAGATCAGAGTGGTAGTAGCAAAGTTAGTATTAGCAGTGAAGGAGCTTCTTCATCAGAGAAGAATTGGTGGGAAACTTTGTTAGAGTTAGATGAGGACAACACCACTTTCTCCTTAGCTGAGGGAAATCACCTTTGGGATGATTCAAAAGTTTGTGACTTTCTTACACAAGGTCAAACTTGGAGTGATTTTCTCTTTGATGTGAATTTGTAA 693 0.4055 MEGSQGVRKGAWSKFEDDLLKACVQQFGEGKWHLVPQRTNMCVGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMFRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHMRSKVVDSQAHSKKEDKQETEIRVKPQEVIKPLPRTFSKASSQGKLIIASTDQSGSSKVSISSEGASSSEKNWWETLLELDEDNTTFSLAEGNHLWDDSKVCDFLTQGQTWSDFLFDVNL. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00558 230 CDD SANT 11 60 IPR001005 -
Seca2g00558 230 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Seca2g00558 230 Pfam Myb-like DNA-binding domain 9 60 IPR001005 -
Seca2g00558 230 SUPERFAMILY Homeodomain-like 6 107 IPR009057 -
Seca2g00558 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 188 - -
Seca2g00558 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Seca2g00558 230 SMART sant 65 113 IPR001005 -
Seca2g00558 230 SMART sant 8 62 IPR001005 -
Seca2g00558 230 ProSiteProfiles Myb-like domain profile. 4 60 IPR001005 -
Seca2g00558 230 FunFam Transcription factor MYB113 68 139 - -
Seca2g00558 230 Gene3D - 68 139 - -
Seca2g00558 230 CDD SANT 69 111 IPR001005 -
Seca2g00558 230 Gene3D - 9 65 - -
Seca2g00558 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca2g00558 230 FunFam Myb transcription factor 9 65 - -
Seca2g00558 230 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00558 Seca-Chr2 7818731 7823016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00558 2 191 MYB Transcription Factor Family AT1G66370 49.533 3.41e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g00558 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00558 - K09422 gmx:100780023 272.322