Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00557 ATGGAAGGATCACAAGGTGTGAGAAAACGCGCATGGAGTAAATTTGAAGATGACCTTCTCAAAGCATGTGTCCAACAATATGGGGAGGGAAAATGGAACCTAGTTCCTCAAAGAACAGGGTTGAATAGATGCCGTAAGAGTTGTAGATTGAGATGGTTGAACTACCTAAAACCAAATATCAAGAGGGGACAATTTACTGAAGATGAGGTTGATTTGATTATCAGATTGCATAAGCTTTTGGGAAATAGATGGTCCCTGATAGCTGGAAGACTTCCTGGAAGAACTCCAAATGATGTGAAAAATTACTGGAACACCCACATGCGCAGTAAAGTAGTAGACTCACAGTCAAAGAGGAGCAAGAAAGAGGCTGAAAGAACACACGAAGTGATAAAGCCTTTGCCTCGAACTTTGTCAAAAGCATCTTCACAATCACAAGGGAAACTCAATAATCAGAGTAGTAGTTGCAAAGTTAGTAAAAGTAGTAATTAA 489 0.3967 MEGSQGVRKRAWSKFEDDLLKACVQQYGEGKWNLVPQRTGLNRCRKSCRLRWLNYLKPNIKRGQFTEDEVDLIIRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTHMRSKVVDSQSKRSKKEAERTHEVIKPLPRTLSKASSQSQGKLNNQSSSCKVSKSSN. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00557 162 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Seca2g00557 162 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Seca2g00557 162 FunFam Transcription factor MYB113 64 134 - -
Seca2g00557 162 FunFam Myb transcription factor 9 61 - -
Seca2g00557 162 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 145 - -
Seca2g00557 162 SMART sant 8 58 IPR001005 -
Seca2g00557 162 SMART sant 61 109 IPR001005 -
Seca2g00557 162 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Seca2g00557 162 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Seca2g00557 162 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Seca2g00557 162 CDD SANT 11 56 IPR001005 -
Seca2g00557 162 MobiDBLite consensus disorder prediction 111 132 - -
Seca2g00557 162 Gene3D - 9 61 - -
Seca2g00557 162 MobiDBLite consensus disorder prediction 136 162 - -
Seca2g00557 162 CDD SANT 65 107 IPR001005 -
Seca2g00557 162 MobiDBLite consensus disorder prediction 111 162 - -
Seca2g00557 162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Seca2g00557 162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Seca2g00557 162 Gene3D - 64 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00557 Seca-Chr2 7811540 7813740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00557 2 142 MYB Transcription Factor Family AT1G66370 58.000 1.17e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g00557 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00557 - K09422 gmx:100781091 232.646