Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00553 ATGAGTAACGTGTTTGAGGGATATGAACGCCAGTACTGCGAACTTTCTGCTAATCTAACAAAATTATGCACTGCAGCTGGTGCTCTTAATGGAGAAGCCTTGATTCGAAAAATGGACATTGAGGCAAGAAGTTTGCAGCCAAACATTAAGGCTGTGCTTCTTGCTAAGTTGCGGGAGTACAAATCAGATCTAAACAATATTAAAAGTGAAGTTAAGAAAATTGTATCTGGTAACTTAAATCCTTCTGCACGGGATGAACTGTTGGAATCAGGCATGGCAGATGCAATGACGATTGGAAAGAAAAGAGCTATGCAGATTGATTACCAGGATGTCATTGTATGCTGTAAGAAGGAAATCGAAATTCTCAAACTGTTCATGCACCCGCACGTTATAAGACTTTATGAGGTCATCGAAACTCCAACTGACATTTATGTTGTCATGGAGTATGTGAAATCTGGAGAGCTTTTTGATTACATAGTAGAAAAGGGCGGGTTGCAAGAAGATGAAGCTTGTAATTTTTTTCAGCAGATAATCTCTGGTGTGAAGTACTGTCATAGGAATTTGGTGGTTCATAGAGATCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTACAGATTGCTGATTTTGGCTTGAGCAACATCATGCGGGATGGTCACTTTATTAAGACAAGTTGTGGAAGCCCCAACTATGCAGCTCCTGAGGTTTGGAATTCTTTGATTTCTGTTCCACCACCAGATACAATGCTACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAATATTGGATTTGACCGGAATCAATTGATCGAATCTCTTCGCTTGTGCCCTTCATTTTTTCCTTGTATGTCTGCCAGATTATCTCTGACTACCATCCATATATTTCAGGGTACCGTGGCATACTATTTGTTATTGGACAGGCGATTCCGTGTTTCCAGTGGCAATCTTGGAGCTCAGTTTCAAGAATCCATGGTGGGTTTCTTTTCCCCTTAA 1011 0.4055 MSNVFEGYERQYCELSANLTKLCTAAGALNGEALIRKMDIEARSLQPNIKAVLLAKLREYKSDLNNIKSEVKKIVSGNLNPSARDELLESGMADAMTIGKKRAMQIDYQDVIVCCKKEIEILKLFMHPHVIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGGLQEDEACNFFQQIISGVKYCHRNLVVHRDLKPENLLLDSKCNVQIADFGLSNIMRDGHFIKTSCGSPNYAAPEVWNSLISVPPPDTMLQAKKIDEEILQEVVNIGFDRNQLIESLRLCPSFFPCMSARLSLTTIHIFQGTVAYYLLLDRRFRVSSGNLGAQFQESMVGFFSP. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00553 336 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 256 280 IPR015940 -
Seca2g00553 336 Gene3D - 30 79 IPR038407 -
Seca2g00553 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Seca2g00553 336 FunFam Maternal embryonic leucine zipper kinase 86 245 - -
Seca2g00553 336 SMART serkin_6 92 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00553 336 PANTHER SERINE/THREONINE KINASE 104 239 - -
Seca2g00553 336 SUPERFAMILY t-snare proteins 6 75 IPR010989 GO:0016020|GO:0016192
Seca2g00553 336 Gene3D Transferase(Phosphotransferase) domain 1 86 249 - -
Seca2g00553 336 SUPERFAMILY Protein kinase-like (PK-like) 108 242 IPR011009 -
Seca2g00553 336 ProSiteProfiles Protein kinase domain profile. 68 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00553 336 Coils Coil 50 70 - -
Seca2g00553 336 Pfam Protein kinase domain 116 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00553 336 Pfam Vesicle transport v-SNARE protein N-terminus 32 73 IPR007705 GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00553 Seca-Chr2 7774459 7780913 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00553 89 238 CBL-interacting serine-threonine protein kinases AT4G24400 51.656 1.84e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca2g00553 Pkinase 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00553 K07198 - csin:114283882 239.195