Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00548 ATGGCAAGGAAGAGAAAGGTTGCTGAAGCTATTGAAGAGAGTAATCCATCTGAGGCAACCATGGCATGGGATGAAGTGATGAAGGAAGCTGCTGCAATAGGAAGTACCAGAAGATCCAGAAAGAAATTTGTTGGGGTCAGACAAAGACCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTGTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCTAGAGCCTATGATGAAGCTGCTTGCTTGCTACGTGGTGCCAACACTAGAACAAACTTCTGGCCTTGTTCTGAACCTTCCTTAACCCCTGCTCTTCCTTCAAAGATTACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAATAATCCTTCCTCAAGCTCTCTTTTTATCAACCACCAACAAAAGCAACAAGTTGATGCATATGGAATTGAGTCAAACTATTTCTCAATTGACCAATTCACTGATTTCCTTAATGACCCTGAAGATTATAGCACAAGCAACATTGAGTTTAGTAATAGTGCACAAATTGATTACATCACAAGTAGTTTTGAATCATGTTTAACTGAGAAAGATCATAACTTGAGGGAAAAAGAAATTGTGACACAAACATCAAGTGGTGACTGCAAAGAAGGCACTGATTTGAGTGACCATGATTTTCAATTCCTGGACAATGCTGTTCCATTGGATCATTACTACTGTCCTTTTGAGATTGCTGAAGAGATTGAGGAGCCTATGGAGCCAGAGATCTATGATGATGAGTCTTCAATGCTAAGAGCTGCCATGAAGAGAATGAAATATGAGAGGAAGTTCTCAGCTTCCCTCTATGCCTTTAATGGGATACCTGAATGCTTGAAGTTTAAACTAGAATCAGGTAACAAAAAGGGAAGTGGGGTTTCTAATCAAATAACTAACCTTAAGGTGTCCTGTAGCAGAAACAAAATTGAGGCTAATAAGAAGGACACAGAACACATGGTAGAAATGGAGAAGAAAGAGGAAGAAAACCAACAGACATCAACTTGGATGGATTCCTCTTTTCCATCCAGTATTGATGGAGAAATGCTACTCTGGAATTCACTTGATCTTTCTAATATTTTCCTTGTTAACTAG 1122 0.3939 MARKRKVAEAIEESNPSEATMAWDEVMKEAAAIGSTRRSRKKFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSEPSLTPALPSKITNLLLQRLKARNNPSSSSLFINHQQKQQVDAYGIESNYFSIDQFTDFLNDPEDYSTSNIEFSNSAQIDYITSSFESCLTEKDHNLREKEIVTQTSSGDCKEGTDLSDHDFQFLDNAVPLDHYYCPFEIAEEIEEPMEPEIYDDESSMLRAAMKRMKYERKFSASLYAFNGIPECLKFKLESGNKKGSGVSNQITNLKVSCSRNKIEANKKDTEHMVEMEKKEEENQQTSTWMDSSFPSSIDGEMLLWNSLDLSNIFLVN. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00548 373 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Seca2g00548 373 Coils Coil 316 336 - -
Seca2g00548 373 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Seca2g00548 373 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Seca2g00548 373 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Seca2g00548 373 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Seca2g00548 373 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 287 - -
Seca2g00548 373 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Seca2g00548 373 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Seca2g00548 373 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Seca2g00548 373 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00548 Seca-Chr2 7721019 7722164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00548 36 98 AP2-EREBP Transcription Factor Family AT5G19790 82.540 5.41e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g00548 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00548 K09286 - gmx:100796159 498.434