LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g00543	ATGGGTTGTGTCAACTCCAAGAAAGCGGTTGCCGGAGCCGATTCTGCTTCGCCGGCGGGACCTTACGTTCATTCTAGCTCACGGAAAAGGAGCAATGGTTCTGGGCAATGCAGCATTGTTGTGGAGGCACCAGCACCACCAGCAACTGTGGTGGGCTCATCCTCCTCAAGAGCACATTCTGGGGTACTGACCCAACAACAACATTCGGGTCATGACCCGAAACCCGAGGAGTGGAAGAAGGGAAACTTGAGCATGAGGCTTGGTTTGTCACATAGGTTTGTGGAAGCAGAACAGAATGCAGCTGGTTGGCCTTCTTGGCTCACCTCTGTTGCAGGGGAAGCCATTCATGGATGGGTCCCTCTCAAAACAGATTCTTTTGAGAAATTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGTGAAGTTGAAACAGGAAGGATGGTTGCCCTGAAGAAGGTGCGGTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAATAATTCTCCGCACACTTGACCACCCAAACATCATGAAATTGGAGGGTATAATCACATCACAACTATCAAAAAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCAGACATCAAGTTCAGTGACTCACAGATTAAGTGTTACATGAGACAGCTATTGAGTGGACTTGAGCACTGTCATCTAAGAGGTATCATGCATAGAGACATTAAAGTATCCAATATATTAGTGAACAATGAAGGCATTCTCAAGATAGGAGATTTTGGATTAGCAAATACCATTAACCCAAATAGCAAACACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCAGTGGATCTGTGGAGTATAGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCTATTCTCAAGGGAAGAAATGAGGTGGAACAATTACACAAAATTTTTAAGCTTTGTGGGTCTCCACCTGATGAGTTCTGGAAAAATAATAAGCTTCCCCTTGCAACAATGTTTAAGCCTCAAACTAGTTATGAAAGTTCTCTTAGGGAGAGGTGTAAGGGTTTTCCTGGGACTGCTGTAAGCCTACTTGAGACTTTACTGTCCATTGATCCCCAAAAGCGTGGGACTGCATCCTCTGCACTTATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAAACCCGGGAAGATATGCGCAGGAAAAAGAATGGAGCTAAAGTGCGAGAGCGAGAGGCTGTAACATCAAGAAGGCAAAGACTAGGCCATAAAGTTCTGCAGGACCCTAACAATGTCAGTAAACCAGCTTTGAAAGAGGAAATGCAGAATGCTTCTCAAAATACTTATAGAGATGATGGTAAAGCACATCATACAAAAGGAAAAGCAGGAGCTATGCACAAAGAGCAACAAAAACCTTTATATGATGCAAAATCAGAGGTTGCCCAAATGATGAATGGTAGTAGTAATGGCTATAGTGTATACTCAGGACCAGCACCAGTCACAGGATCTAGTGGCTTTACATGGGCAAAAAGGAGAAAACCAGATACTTCATCCATACTATCAGATGGCTCAAGAAGCAAGATCAGTGAACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACAAAACATGGGATACAAGTTTCAGAAAGAAAACATAATTACAACACAAGCCACCAAGATGAGACTTCCCTTCATGTATTGCAAATGCACCAGGCTCATCATGGTCAACGAGAATCATTTGATGTAGATGATGCATACCATTCAAATCATTACATGGAATTTGATCTCTCAGAAAAAACAGATGCTCTCATAAACACTCAGGGCTACAGAAAATATGGTGAGTCTGTGGAACAATCAATACCAACAATGATCCAAACAAATAAAAACGATGAATTGTTGCATTGGAATGAAAATAATATGCGGCAATCTGTTCGTAGATCAAGGTTTGGAAGAGATTATACACATATCTCAATTAGTTTGTACAAACAGATGAGTCAAGGATTATTGGAGTGGAGTGATCCCCACCTCTACAAGGGTGCTTGA	2169	0.4228	MGCVNSKKAVAGADSASPAGPYVHSSSRKRSNGSGQCSIVVEAPAPPATVVGSSSSRAHSGVLTQQQHSGHDPKPEEWKKGNLSMRLGLSHRFVEAEQNAAGWPSWLTSVAGEAIHGWVPLKTDSFEKLDKIGQGTYSSVFQAREVETGRMVALKKVRFDNFQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSKSIYLVFEYMEHDLAGLVSSPDIKFSDSQIKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTINPNSKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSIGCVFAELFLGKPILKGRNEVEQLHKIFKLCGSPPDEFWKNNKLPLATMFKPQTSYESSLRERCKGFPGTAVSLLETLLSIDPQKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDAKTREDMRRKKNGAKVREREAVTSRRQRLGHKVLQDPNNVSKPALKEEMQNASQNTYRDDGKAHHTKGKAGAMHKEQQKPLYDAKSEVAQMMNGSSNGYSVYSGPAPVTGSSGFTWAKRRKPDTSSILSDGSRSKISELDPTFAKGTYDLTKHGIQVSERKHNYNTSHQDETSLHVLQMHQAHHGQRESFDVDDAYHSNHYMEFDLSEKTDALINTQGYRKYGESVEQSIPTMIQTNKNDELLHWNENNMRQSVRRSRFGRDYTHISISLYKQMSQGLLEWSDPHLYKGA.	723

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g00543	722	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468
	Seca2g00543	722	MobiDBLite	consensus disorder prediction	490	510	-	-
	Seca2g00543	722	MobiDBLite	consensus disorder prediction	429	464	-	-
	Seca2g00543	722	MobiDBLite	consensus disorder prediction	421	510	-	-
	Seca2g00543	722	Pfam	Protein kinase domain	126	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00543	722	ProSitePatterns	Protein kinases ATP-binding region signature.	132	155	IPR017441	GO:0005524
	Seca2g00543	722	FunFam	probable serine/threonine-protein kinase At1g54610	209	450	-	-
	Seca2g00543	722	Gene3D	Phosphorylase Kinase; domain 1	113	208	-	-
	Seca2g00543	722	FunFam	probable serine/threonine-protein kinase At1g54610	113	208	-	-
	Seca2g00543	722	ProSiteProfiles	Protein kinase domain profile.	126	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00543	722	SMART	serkin_6	126	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00543	722	MobiDBLite	consensus disorder prediction	49	69	-	-
	Seca2g00543	722	MobiDBLite	consensus disorder prediction	1	79	-	-
	Seca2g00543	722	MobiDBLite	consensus disorder prediction	20	38	-	-
	Seca2g00543	722	Gene3D	Transferase(Phosphotransferase) domain 1	209	450	-	-
	Seca2g00543	722	CDD	STKc_CDK9_like	126	410	-	-
	Seca2g00543	722	PANTHER	CELL DIVISION PROTEIN KINASE	124	414	-	-
	Seca2g00543	722	SUPERFAMILY	Protein kinase-like (PK-like)	119	415	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g00543	Seca-Chr2	7688857	7694844	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g00543	118	467	Core Cell Cycle Gene Families	AT5G10270	45.753	2.56e-108	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca2g00543		Pkinase	2.7e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g00543	-		-	lja:Lj1g3v2982400.1	1078.16