Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00524 ATGGTGCTTGGTTTCAATGTGGTTTTCCCTGTAGTCCTTAACGCTGCAATTGAACTCAAACTATTTGAGATCATTGCCAAGGACAGTGATGATGGTGGTTTTATGTCAGCCTTTGAAATTGCTTCCAAGCTACCAACCAAACACTCTGACGTACCAAATAGGCTCGACCGTGTGCTCCGTTTGCTTGCTAGTTACTCTCTTCTCACTGTTTCCACTCTCACCAATGAGGATGGTAGAATGGTGATAGTTTATGGAATCTCATCATCTGGTAAATATTTTGTTGATGATGAGAACGGTGATGGTAATCTTGCTTCATTCGCATCATTCTCATGTCACCATACTTTGTCAGGGATGTGGCTGAATTTTGGAGAAGAAATTGTTGATCTTGAAATTGACATGCACAAGAAAGTTCATGGAAAATCTTTATACGAGTACATGGAGAAAGACCTAGAAATGAAGCAAGCATTTAACAAATCAATGAGTGATATATCCTCAATCCATATGAAAAGAATACTTGAAATATACACGGGATACGAGGGAGTATCAACTTTGATTGATGTTGGAGGTGGAAATGGACAAAGTCTCAAAATGATCATCTCTAAATACCCGTCAATCAAGGGAGTTAACTTTGAACTCCAACAAAGGGATGACACTCATACCCTGTCTGCCATGGTGCTTGGTGCCAATATGGTGTTTCCAGCAGCACTTAATGCTGCAATTGAACTCAAACTATTTGAGATCATTGCTAAGGAAAGTTCACCACAAAATGGTGGATTCATGTCAGTCTTTGAAATTGCTTCAAAGCTACCAACTCAACATTCTGACTTGCCATATAGGCTTGACCGTGTGCTGCGTTTGCTTGCAAGTTACTCTCTTCTCTCTGTTTCCTCTCGCACCAATGAGGATGGAAGTGTCGTCAGAGTTTATGGCATCTCACCATCTGGAAAATATTTCTTCTTTGATGAAAATAGTGATGGCTATCTTGCCTCATTCACATCATTTTTATGTCACCCTGCACTCTCAGGGTTGTGGTTGAATTTTAAGGAAGCAGTTGTTGATCCTGAGATTGACCTATTCAAGAAAGTAAATGGAATATCTAAGTATGAGTACTTTGGTAAAGATGCACAACTAAACCATGTATTTAACAAATCAATGACCGATATCTGCTCAACTGAGATGAAAAGAATCCTTGAAATATACAAAGGATACGAAGGAATATCAACTTTGGTTGATGTAGGAGGTGGACATGGACAATGTCTCAAAATGATTATCTCCAAATACCCATCAATAAAGGCAATTAATTTTGACCTCCCACAAGTCATTGAAAATGCACCACACATTCCAGGAATTGAGCATGTTGGAGGAAATATGTTCGAAAGCATTCCACAAGGAGATGCTATAATGCTAAAGGCCGTGTGCCATAATTGGTCGGATGAAAAATGCATAGAAATTTTAAGCAATTGTCACAAAGCTCTGCCATCAAATGGAAAGGTGATTATTGTGGAGTTCATACTGCCAGAAGATCCAAAACCAACAAATGCATCTAAAATGATTTCAATTCTTGATAACATCATGTTTATCACATCTGGTGGCATGGAAAGAACTGAGAAACACTATGAAAGTTTGGGAAAGCGCTCTGGATTTTCTAGGTTTAAATTTGTTTGTTGTGCTTTCTCTATCGTGGGGGTAATGGAGCTTTACAAATAA 1707 0.3878 MVLGFNVVFPVVLNAAIELKLFEIIAKDSDDGGFMSAFEIASKLPTKHSDVPNRLDRVLRLLASYSLLTVSTLTNEDGRMVIVYGISSSGKYFVDDENGDGNLASFASFSCHHTLSGMWLNFGEEIVDLEIDMHKKVHGKSLYEYMEKDLEMKQAFNKSMSDISSIHMKRILEIYTGYEGVSTLIDVGGGNGQSLKMIISKYPSIKGVNFELQQRDDTHTLSAMVLGANMVFPAALNAAIELKLFEIIAKESSPQNGGFMSVFEIASKLPTQHSDLPYRLDRVLRLLASYSLLSVSSRTNEDGSVVRVYGISPSGKYFFFDENSDGYLASFTSFLCHPALSGLWLNFKEAVVDPEIDLFKKVNGISKYEYFGKDAQLNHVFNKSMTDICSTEMKRILEIYKGYEGISTLVDVGGGHGQCLKMIISKYPSIKAINFDLPQVIENAPHIPGIEHVGGNMFESIPQGDAIMLKAVCHNWSDEKCIEILSNCHKALPSNGKVIIVEFILPEDPKPTNASKMISILDNIMFITSGGMERTEKHYESLGKRSGFSRFKFVCCAFSIVGVMELYK. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00524 568 SUPERFAMILY "Winged helix" DNA-binding domain 217 322 IPR036390 -
Seca2g00524 568 SUPERFAMILY "Winged helix" DNA-binding domain 3 97 IPR036390 -
Seca2g00524 568 FunFam Caffeic acid O-methyltransferase 322 568 - -
Seca2g00524 568 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 212 IPR029063 -
Seca2g00524 568 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 327 565 IPR029063 -
Seca2g00524 568 Gene3D Vaccinia Virus protein VP39 378 557 IPR029063 -
Seca2g00524 568 Pfam Dimerisation domain 12 63 IPR012967 GO:0046983
Seca2g00524 568 Pfam Dimerisation domain 235 288 IPR012967 GO:0046983
Seca2g00524 568 PANTHER O-METHYLTRANSFERASE 224 550 IPR016461 GO:0008168
Seca2g00524 568 FunFam Caffeic acid 3-O-methyltransferase 206 318 - -
Seca2g00524 568 Gene3D Vaccinia Virus protein VP39 96 221 IPR029063 -
Seca2g00524 568 FunFam Caffeic acid 3-O-methyltransferase 1 93 - -
Seca2g00524 568 Gene3D - 231 396 IPR036388 -
Seca2g00524 568 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 214 IPR016461 GO:0008168
Seca2g00524 568 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 224 568 IPR016461 GO:0008168
Seca2g00524 568 Gene3D - 1 93 IPR036388 -
Seca2g00524 568 Pfam O-methyltransferase domain 121 213 IPR001077 GO:0008171
Seca2g00524 568 Pfam O-methyltransferase domain 344 549 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00524 Seca-Chr2 7439336 7461462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00524 212 568 Monolignol Biosynthesis Gene Families AT5G54160 49.582 1.33e-111 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00524 - - gmx:100798295 550.436