LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g00522	ATGTTATTTGACGAACAATTCCATTTGGTGTTTGACCGTGTTTTGGAAAAAGATGTATTGTTCGCTGAATTGATTGTGGGTTATGCTCAACATGGTCTTCATGGGGAAGCTTTAGAGTTTTTTGAGGACATGGTTGATAGGAGAATCAAGCCTAATGAGTATACTCTTGCAAGCATCTTGATTAGTTGTGGTAATCTAGGTGATTTAGTTAATGGTCAGTTGATTCACTGTCTTGTTGATTCTGGTCTTAAAGCAGTCATGTGTATGGGAGTAACTGCTGGTGTTGGCTTGGTGGTTCATTATATTTGTGGCCAACCTGGCCCTGCTGCTATTGTCATTAGGAATGGCCTGGCATTATCATCTACTGTTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGAATGGAAAAGCTACATTTTCTATTTTACCTTTTCAGGATTTGGCTGTTGTGGTCTTATTAATCCTCATACCCCCAATTTCACCTAGTTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCAAAGCAATAGCTGAATTTGGAGTTGTTTTTCTTTTCTTCAATATTGGCCTGAAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGCTCTCTTCTTTTATTGGTCGTGCCTCTGCTAGAAATAAGGGTCGAATGGCTCGCTATCTTGCAAAAAAATGTTCAATTGTATCACGGATTGACTGCTTTTTTGAAAGGGGTTCTACTGCATTTGGGGAGAAGCTTCGTGAGCAAGTTGAGGAGCGGCTTGACTTTTATGACAAGGGAGTTGCCTCTCAGAAGAACATAGATGTCATGAAATCTGCTATTGAAAGTGTTGTAAACAAAGATACAGAGATGGAAACAGAAGAAGTGCCTCTTGAAGTTTCAGTCAAGAAAGGCAAGAAGAAGAAGCATAAAGCTGTTGCTGATGTGGCTGCTGGATTTGGTTTCAAGTTTTATGAAGATCCCTTTTCTTTTGTTGTGTTCCTCTTTTGGTTTCAAGTTGATATTGGTTGA	1023	0.4037	MLFDEQFHLVFDRVLEKDVLFAELIVGYAQHGLHGEALEFFEDMVDRRIKPNEYTLASILISCGNLGDLVNGQLIHCLVDSGLKAVMCMGVTAGVGLVVHYICGQPGPAAIVIRNGLALSSTVVVLQVLQERGESTSRNGKATFSILPFQDLAVVVLLILIPPISPSSSKGGVGFQAKAIAEFGVVFLFFNIGLKLSVERLSSMKLSSFIGRASARNKGRMARYLAKKCSIVSRIDCFFERGSTAFGEKLREQVEERLDFYDKGVASQKNIDVMKSAIESVVNKDTEMETEEVPLEVSVKKGKKKKHKAVADVAAGFGFKFYEDPFSFVVFLFWFQVDIG.	341

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g00522	340	SUPERFAMILY	Nop domain	198	262	IPR036070	-
	Seca2g00522	340	Gene3D	Tetratricopeptide repeat domain	5	75	IPR011990	GO:0005515
	Seca2g00522	340	NCBIfam	pentatricopeptide repeat	24	53	IPR002885	-
	Seca2g00522	340	Gene3D	-	76	179	IPR038770	-
	Seca2g00522	340	Pfam	Sodium/hydrogen exchanger family	87	172	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Seca2g00522	340	Gene3D	Nop domain	180	261	IPR042239	-
	Seca2g00522	340	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	177	209	-	-
	Seca2g00522	340	Pfam	snoRNA binding domain, fibrillarin	206	259	IPR002687	-
	Seca2g00522	340	Pfam	PPR repeat family	24	60	IPR002885	-
	Seca2g00522	340	ProSiteProfiles	Nop domain profile.	112	263	IPR002687	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g00522	Seca-Chr2	7424404	7425426	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g00522	178	205	Inorganic Solute Cotransporters	AT4G00630	92.857	2.48e-08	53.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g00522	K14564		-	egr:104426176	156.377

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