Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00522 ATGTTATTTGACGAACAATTCCATTTGGTGTTTGACCGTGTTTTGGAAAAAGATGTATTGTTCGCTGAATTGATTGTGGGTTATGCTCAACATGGTCTTCATGGGGAAGCTTTAGAGTTTTTTGAGGACATGGTTGATAGGAGAATCAAGCCTAATGAGTATACTCTTGCAAGCATCTTGATTAGTTGTGGTAATCTAGGTGATTTAGTTAATGGTCAGTTGATTCACTGTCTTGTTGATTCTGGTCTTAAAGCAGTCATGTGTATGGGAGTAACTGCTGGTGTTGGCTTGGTGGTTCATTATATTTGTGGCCAACCTGGCCCTGCTGCTATTGTCATTAGGAATGGCCTGGCATTATCATCTACTGTTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGAATGGAAAAGCTACATTTTCTATTTTACCTTTTCAGGATTTGGCTGTTGTGGTCTTATTAATCCTCATACCCCCAATTTCACCTAGTTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCAAAGCAATAGCTGAATTTGGAGTTGTTTTTCTTTTCTTCAATATTGGCCTGAAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGCTCTCTTCTTTTATTGGTCGTGCCTCTGCTAGAAATAAGGGTCGAATGGCTCGCTATCTTGCAAAAAAATGTTCAATTGTATCACGGATTGACTGCTTTTTTGAAAGGGGTTCTACTGCATTTGGGGAGAAGCTTCGTGAGCAAGTTGAGGAGCGGCTTGACTTTTATGACAAGGGAGTTGCCTCTCAGAAGAACATAGATGTCATGAAATCTGCTATTGAAAGTGTTGTAAACAAAGATACAGAGATGGAAACAGAAGAAGTGCCTCTTGAAGTTTCAGTCAAGAAAGGCAAGAAGAAGAAGCATAAAGCTGTTGCTGATGTGGCTGCTGGATTTGGTTTCAAGTTTTATGAAGATCCCTTTTCTTTTGTTGTGTTCCTCTTTTGGTTTCAAGTTGATATTGGTTGA 1023 0.4037 MLFDEQFHLVFDRVLEKDVLFAELIVGYAQHGLHGEALEFFEDMVDRRIKPNEYTLASILISCGNLGDLVNGQLIHCLVDSGLKAVMCMGVTAGVGLVVHYICGQPGPAAIVIRNGLALSSTVVVLQVLQERGESTSRNGKATFSILPFQDLAVVVLLILIPPISPSSSKGGVGFQAKAIAEFGVVFLFFNIGLKLSVERLSSMKLSSFIGRASARNKGRMARYLAKKCSIVSRIDCFFERGSTAFGEKLREQVEERLDFYDKGVASQKNIDVMKSAIESVVNKDTEMETEEVPLEVSVKKGKKKKHKAVADVAAGFGFKFYEDPFSFVVFLFWFQVDIG. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00522 340 SUPERFAMILY Nop domain 198 262 IPR036070 -
Seca2g00522 340 Gene3D Tetratricopeptide repeat domain 5 75 IPR011990 GO:0005515
Seca2g00522 340 NCBIfam pentatricopeptide repeat 24 53 IPR002885 -
Seca2g00522 340 Gene3D - 76 179 IPR038770 -
Seca2g00522 340 Pfam Sodium/hydrogen exchanger family 87 172 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca2g00522 340 Gene3D Nop domain 180 261 IPR042239 -
Seca2g00522 340 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 177 209 - -
Seca2g00522 340 Pfam snoRNA binding domain, fibrillarin 206 259 IPR002687 -
Seca2g00522 340 Pfam PPR repeat family 24 60 IPR002885 -
Seca2g00522 340 ProSiteProfiles Nop domain profile. 112 263 IPR002687 -
Seca2g00522 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 17 51 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00522 Seca-Chr2 7424404 7425426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00522 178 205 Inorganic Solute Cotransporters AT4G00630 92.857 2.48e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00522 K14564 - egr:104426176 156.377