Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00517 ATGCCCTTCTTCTCCTCTCTCCCTAGGTGGACTTGTCGACATGGGAGCACAATCAGCAACGTTGGAGACAGTGTCAGCGGAAGCAGTGATAACGCAACGGCGGTTGTGGATGACAATCCAATCACCAGCGTGGTGGAGTGTTACGCCTGCACGCAGGTAGGCGTGCCGGTTTTTCACTCCACCAGCTGTGACAGCTGTCACCAGCCTCAATGGGAGGCATCAGCGGGCTCTTCCTTGGTTCCAATTCAGAACCGGGCCGGGAAAGCCCAGAGCATGCGGGCTATGTCCCGGGCTAATTCCGGGCCTTTCGGCACTGTGTTAGATCCCAGGAGTAAGCGCGTGCAAATGTGGAACCGCGCGTTGCTGTTGGCGCGTGGGGTGGCGTTAGCCATAGACCCGCTGTTTTTCTACGCGCTGTCGATTGGGCGTGAGGGTTCGCCGTGCCTGTATATGGACGGTGGGTTGGCGGCGATGGTGACGGTGGCGCGGACGTGTGTGGATGCGGTGCATCTGTTTCATGTGTGGCTGCAGTTCAGGTTGGCATACGTGTCGAGAGAGTCGCTGGTTGTGGGGTGTGGGAAGCTCGTGTGGGACGCACGTGCTATAGCTTCCCACTACTTGCGATCCTTCAAGGGATTCTGGTTTGATGCGTTTGTTATTCTCCCTGTTCCCCAGGCTGTGTTTTGGCTAATAGTACCAAAATTGATAAGAGAAGAGAGGATTAAAATCATTATGACCATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGAACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGTGTTGCATCATGCCTCAGACAACAGTGTGAAAGAACTCATGGATGCAATCTCTCTGTGTCATGCTCAGAGGAGATATGCTACCAGTCTTTGTTACCAGCAGGAACTATTGGAAATCCATGTGGTGGAAACTCAACATTTGTGGCAAGAAAACCTTTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCCAGCAACTCTTTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTACTCAGTGGGCTACTGCTTTTCACTTTGTTGATTGGTAACATCCAGGTATTCTTACATGCTGTCATGGCAAAGAAGAGAAAGATGCAGCTTAGATGCCGAGATATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCGCGGTTAAGACAAAGAGTTCGCCATTTTGAACGTCAAAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGTCTTAGGAGAGACATCAAGCGCTATCTTTGCCTAGACCTCATTAAAAAAGTACCTCTGTTCCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCCCTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGACCCTGTACAAAGGATGGTGTTCATTGTTCGTGGACGCATAAGAAGGAACCAAAGTCTCAGCAAAGGCATGGTAGCCTCTAGTGTCCTTGAACCAGGAGGTTTTCTAGGTGATGAGCTACTTTCATGGTGTCTTCGGCGTCCATTCATAGATAGGCTCCCAGCTTCTTCAGCCACATTTGTGTGCCTTGAATCAGCAGAAGCTTTTGGCCTTGATGCTAATCACTTGAGGTACATCACTGATCACTTCCGTTACAAATTTGCTAATGAGAGGCTAAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACATGGGCTGCTGTCATCATTCAACTTTCTTGGAGACGTTACAGGAAGAGGACTAGAGGTCCAGTGACCCCTGTAAGGGAAAGTGGAGGCACTGAACGAAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAAGCCACATGACCATCTTGAATGA 2130 0.477 MPFFSSLPRWTCRHGSTISNVGDSVSGSSDNATAVVDDNPITSVVECYACTQVGVPVFHSTSCDSCHQPQWEASAGSSLVPIQNRAGKAQSMRAMSRANSGPFGTVLDPRSKRVQMWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLFHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYLRSFKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTHGCNLSVSCSEEICYQSLLPAGTIGNPCGGNSTFVARKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVQRMVFIVRGRIRRNQSLSKGMVASSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESAEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVIIQLSWRRYRKRTRGPVTPVRESGGTERRLLQYAAMFMSIKPHDHLE. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00517 709 CDD CAP_ED 522 632 IPR000595 -
Seca2g00517 709 SUPERFAMILY cAMP-binding domain-like 449 636 IPR018490 -
Seca2g00517 709 Gene3D Jelly Rolls 520 638 IPR014710 -
Seca2g00517 709 ProSiteProfiles cAMP/cGMP binding motif profile. 522 632 IPR000595 -
Seca2g00517 709 Gene3D - 148 445 - -
Seca2g00517 709 Pfam Ion transport protein 116 440 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca2g00517 709 SMART cnmp_10 522 648 IPR000595 -
Seca2g00517 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 95 676 - -
Seca2g00517 709 Gene3D Helix hairpin bin 448 513 - -
Seca2g00517 709 SUPERFAMILY Voltage-gated potassium channels 108 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00517 Seca-Chr2 7407065 7414038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00517 38 709 Ion Channels AT5G15410 79.032 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00517 K05391 - gmx:100798823 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00517 2 7407065 7414038 Seca2g00517 2 7407065 7414038 ECH