Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00499 ATGTTTGAAAAGGGGCAGTCCATCTTCTGGTGGATTTTCTTCATGTTACTCTATGTTCCTTTACTACTTTCTTCACCCTATGTTGCTGGTTTTTCTAGGAATGTTTCATTGACATTTTCTGCAGTTCATAATGAAATCTCAGTAAAAGACAGTGAAGTGAATGGTCTGCTAAAGTGGAAAGATAGCTTTGATAACCATAGCCAAGCTCTATTGTCATCTTGGAAAGGCACTGATCCTTGCAAATGGGAAGGAATTCTATGTGATAAATACTCCAAGTCTGTCTCTAGCATAAATCTTGCAAATTATGGACTGAAAGGTACACTCCACACACTAAACTTCTCCTTATTCCCTAACCTCCTCAGTTTTAATATCTATAACAACTCCTTTTATGGAACAATTCCCCCACAAATTGGTAACATGTCCAAAGTCAACCATTTGAACCTCTCTTCAAATTTTTTTCATGGTTTCATCCCTTTAGAGATTGGGAAATTGAACAACTTGGAGTATCTAGATACTTACAATAATAACCTCTTTGGTTCCATACCTCAGGAAATTGGAATGTTGAAAAAGCTTAAGATTATTGATTTGTCAAGAAACACTCTCTCTGGTACTATCCCTTTTGCAATTGGTAACATGAGCAACTTAAATGAACTTTACCTTGATAACAACCACCTTTCTGGTCCAATTCCTTCCACTATTGGAAACTTGACAAAGCTCACTATATTATACTTAGGCTTAAATAACCTTTTTGGATCAATTCCTGCAACTATAGGAAATTTGATCAGTTTGCATACCCTCTACCTCCAAGGAAACAATCTCTCTAGTTCTATTCCTTCCACAATAGGAAATTTGGTATTACTCACCTCACTGGGATTGTCCTCTAACAATCTTAATGGCTGGATTCCACAGGAAATGAATAACATAACCAACTTTAAATTCTTGCAATTATCTAATAATGATTTCATTGGTCATTTGCCACCTCAAATCTGCTCTGGTGGGTCACTAGCATTCTTTGCAGCTGATCACAATCGTCTAACAGGTCCAACACCAACAAGTTTGAAGAATTGTTCTAGTCTTGTCAGAATCAGGCTTGAAGAAAACCAAATTGCAGGAAATATAACAGAAGATTTTGGCACATATCCAAATTTGAAATACATTGATTTAAGTGGCAATAGATTTTATGGTCACATTTCACCAAACTGGGGGAAGTGCCTTAATCTTGATACCCTTAAGATATCAAACAACAATATTTCTGGTGCTATACCACTTCAATTTGTTGAGGCAACCAACTTAGGAAGGCTTCACCTTTCTTCAAATAACTTGATAGGAAACCTTCCCAGAGAACTAGGGATTCTAAAATCATTAATTGAGGTTAAGATCAACAACAATCATATCTCAGGAAACATTCCCACAGAAATAGGACTGATAAGGAATCTTCAATACTTGAATCTAGGAGGAAATGAGTTCAGTGGCACAATACCAAAACAAGTTGTGGGGTTACCTAACTTATTGGAATTGAATTTGAGCAATAATAAAATAAAGGGAAGCATTCCCTCTGAGTTTAGCCAACTACAGCCTCTTGAATCCCTTGATCTCAGTGGCAATTCTTTGAGTGGAACAATACCAAGAATAGTTGGAGAGTTGCGGCGCCTGCAATTGTTGAACCTCTCACACAACAATCTTTCTGACACTATTCCATCTAGTTTTGATGAGATGTCAAGCTTGATTTCTGTTGACATATCTTACAACCAATTAGAAGGTCCACTTCCAAAAAATCAGGCCTTCCTTAAATCACCAATAGATTCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTTACTGGCTTGGCACTTTGCCCAACCAATCACAGTCCAAAGAGTGTCAAAGTCATGCTATTGGTAATATTCCTTATCTTGGCCACTTTGATACTAGTATTTTGTGGGGTGGGATTTTCAATATATATTCTTTGTGGAAGTAGAAGAAAGAAAATAACTCATATTGAACAACAAAATGGAGAACTCTTTTCTATATGGAATTGTGATGGGAGAATAATTTATGAAAATATAATTGAAGCTACAGAGAATTTTGATGACAAACATCTCATTGCAAAGGGAGGGCAAGGGTGTGTTTACAAGGTTGAGTTGCCTACAAGCTTGGTTGTTGCTGTAAAGAAACTTCACTCTCTAACAAATGAAGAAACATCCAATTTCAAAGCTTTTACAAGTGAGGTTCAAGCATTGACAGAACTCAAACACCGTAATATTGTAAAGTTGTATGGATTTTGTTCACATTCACAATTCTCATTTTTGGTTTATGAGTTCTTAGAAGGAGGGAGCCTTGATCAAATGCTAAACAATGAGACACGAGCAATGGCATTTGATTGGAAAAGGAGGGTAAATGTTGTAAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGATTGTTCACCTCCCATAGTTCATTGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATATTTCTGATTTTGGGACTGCTAAGTTTCTGAAGCCTGGTCCATGCAGTTGGACCCCACTTGTTGGCACCTTAGGTTATATTGCTCCAGAGCTTGCCCTAGCGATGGAAGTGAATGAGAAATGTGATGTTTACAGTTTTGGAGTGCTTTGTTTAGAAATTCTTATGGGAAAGCATCCAGGAGAGCTTATGTCTTCATTGGTGTCATCATCTACAGCGTTAATGACTTACAATTTATTCTTGATTGATGTGTTAGATAAACGACCTCCTCAACCTATGAAATCAATAGTTGGCGAGGTCATTATGATAGCAACATTGGCATTAGCTTGCTTAAGTGAAAATCCAAATTCTCGCCCAACCATGGATCAAGTATCTAAAGAGCTTATGATGGGGAGATCACCTTTAGTGGACCAATTCCATACTATTACACTTGGACATTTGCACTAA 2961 0.3698 MFEKGQSIFWWIFFMLLYVPLLLSSPYVAGFSRNVSLTFSAVHNEISVKDSEVNGLLKWKDSFDNHSQALLSSWKGTDPCKWEGILCDKYSKSVSSINLANYGLKGTLHTLNFSLFPNLLSFNIYNNSFYGTIPPQIGNMSKVNHLNLSSNFFHGFIPLEIGKLNNLEYLDTYNNNLFGSIPQEIGMLKKLKIIDLSRNTLSGTIPFAIGNMSNLNELYLDNNHLSGPIPSTIGNLTKLTILYLGLNNLFGSIPATIGNLISLHTLYLQGNNLSSSIPSTIGNLVLLTSLGLSSNNLNGWIPQEMNNITNFKFLQLSNNDFIGHLPPQICSGGSLAFFAADHNRLTGPTPTSLKNCSSLVRIRLEENQIAGNITEDFGTYPNLKYIDLSGNRFYGHISPNWGKCLNLDTLKISNNNISGAIPLQFVEATNLGRLHLSSNNLIGNLPRELGILKSLIEVKINNNHISGNIPTEIGLIRNLQYLNLGGNEFSGTIPKQVVGLPNLLELNLSNNKIKGSIPSEFSQLQPLESLDLSGNSLSGTIPRIVGELRRLQLLNLSHNNLSDTIPSSFDEMSSLISVDISYNQLEGPLPKNQAFLKSPIDSLRNNKGLCGNVTGLALCPTNHSPKSVKVMLLVIFLILATLILVFCGVGFSIYILCGSRRKKITHIEQQNGELFSIWNCDGRIIYENIIEATENFDDKHLIAKGGQGCVYKVELPTSLVVAVKKLHSLTNEETSNFKAFTSEVQALTELKHRNIVKLYGFCSHSQFSFLVYEFLEGGSLDQMLNNETRAMAFDWKRRVNVVKGVANALSYMHHDCSPPIVHCDISSKNVLLDLEYEAHISDFGTAKFLKPGPCSWTPLVGTLGYIAPELALAMEVNEKCDVYSFGVLCLEILMGKHPGELMSSLVSSSTALMTYNLFLIDVLDKRPPQPMKSIVGEVIMIATLALACLSENPNSRPTMDQVSKELMMGRSPLVDQFHTITLGHLH. 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00499 986 Pfam Leucine Rich Repeat 550 570 IPR001611 GO:0005515
Seca2g00499 986 FunFam Nuclear pore complex protein NUP107 49 207 - -
Seca2g00499 986 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Seca2g00499 986 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 329 623 - -
Seca2g00499 986 Gene3D Phosphorylase Kinase; domain 1 658 774 - -
Seca2g00499 986 FunFam MDIS1-interacting receptor like kinase 2 isoform A 227 328 - -
Seca2g00499 986 SMART LRR_typ_2 212 236 IPR003591 -
Seca2g00499 986 SMART LRR_typ_2 500 524 IPR003591 -
Seca2g00499 986 SMART LRR_typ_2 260 284 IPR003591 -
Seca2g00499 986 SMART LRR_typ_2 548 571 IPR003591 -
Seca2g00499 986 SMART LRR_typ_2 164 188 IPR003591 -
Seca2g00499 986 PANTHER LEUCINE RICH REPEAT KINASE 2 257 969 - -
Seca2g00499 986 PRINTS Leucine-rich repeat signature 527 540 - -
Seca2g00499 986 PRINTS Leucine-rich repeat signature 548 561 - -
Seca2g00499 986 Gene3D Ribonuclease Inhibitor 205 302 IPR032675 -
Seca2g00499 986 Pfam Protein kinase domain 698 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00499 986 Pfam Leucine rich repeat 477 537 IPR001611 GO:0005515
Seca2g00499 986 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Seca2g00499 986 SUPERFAMILY L domain-like 338 611 - -
Seca2g00499 986 FunFam Leucine-rich repeat receptor protein kinase MSP1 659 774 - -
Seca2g00499 986 ProSiteProfiles Leucine-rich repeat profile. 502 524 IPR001611 GO:0005515
Seca2g00499 986 SUPERFAMILY Protein kinase-like (PK-like) 681 966 IPR011009 -
Seca2g00499 986 Gene3D Ribonuclease Inhibitor 303 396 IPR032675 -
Seca2g00499 986 Gene3D Ribonuclease Inhibitor 496 619 IPR032675 -
Seca2g00499 986 ProSitePatterns Tyrosine protein kinases specific active-site signature. 820 832 IPR008266 GO:0004672|GO:0006468
Seca2g00499 986 Gene3D Transferase(Phosphotransferase) domain 1 775 975 - -
Seca2g00499 986 FunFam MDIS1-interacting receptor like kinase 2 775 972 - -
Seca2g00499 986 SUPERFAMILY L domain-like 57 349 - -
Seca2g00499 986 Gene3D Ribonuclease Inhibitor 49 204 IPR032675 -
Seca2g00499 986 Gene3D Ribonuclease Inhibitor 397 495 IPR032675 -
Seca2g00499 986 ProSiteProfiles Protein kinase domain profile. 696 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00499 Seca-Chr2 7144997 7148543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00499 124 868 Receptor kinase-like Gene Family AT4G08850 45.971 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00499 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00499 - - gmx:100803216 1154.81