Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00497 ATGTTTCTTGGAGCGATGGAGCTTCCAGAGTGGACGGATATTGTCAAAACTGCAAGATTTAAAGAATTGGCTCCCCATGATCCTGATTGGTATTATGTTAGAGCGGCTTCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGTGCATTTCAGAGGATTTATGGTGGGAGCCAGAGGAATGGTAGTCGTCCTCCTCATTTTTGCAAGAGCAGTGGCGCCATTGCTCGTCACATTCTTCAACAGTTGCAGAACATGAGCATCATTGAGCTTGACACCAAAGGTGGCAGGAGGATCACATCCAGTGGTCGGCGGGATCTTGACCAAGTGGCTGGGCGGATTGTAGTTGCCCCTTGA 363 0.4904 MFLGAMELPEWTDIVKTARFKELAPHDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNMSIIELDTKGGRRITSSGRRDLDQVAGRIVVAP. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00497 120 Gene3D - 3 119 IPR036388 -
Seca2g00497 120 Pfam Ribosomal protein S19e 5 117 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca2g00497 120 SMART Ribosomal_S19e_2 1 119 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca2g00497 120 SUPERFAMILY "Winged helix" DNA-binding domain 4 118 IPR036390 -
Seca2g00497 120 ProSitePatterns Ribosomal protein S19e signature. 67 86 IPR018277 GO:0003735|GO:0005840|GO:0006412
Seca2g00497 120 FunFam 40S ribosomal protein S19 2 120 - -
Seca2g00497 120 PANTHER 40S RIBOSOMAL PROTEIN S19 4 116 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00497 Seca-Chr2 7140851 7142989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00497 4 120 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.761 7.15e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00497 K02966 - gmx:100305587 233.032