Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00495 ATGGCACAATCCATCTGCTGGTGGATTTTCTTCATATTACTCTATGTTCCTGGTTTTTCTAGGAATGCTTCTTTGATATCTTCTGTGGTTTATAATGAAATCACAGTAAAACACAGTGAAGTGAATGGTCTGTTAAAGTGGAAAGCCAGCTTTGATAACCATAGCCAAGCTCTCTTGTCATCTTGGACAGGCACTGATCCTTGCAAATGGGAAGGAATTCTTTGTGATAAATCCAAGTTTGTCTCTAGCATAAATCTTGCAAATTATGGACTTCAAGGTACACTCCACACTCTCAACTTTTCCTTATTCCCTAACCTCCTTAGTCTTAACATCCACAACAACTCCTTTTATGGAACCCTTCCTCCACAAATCATAAACATGTCTAAACTCAACCACTTGAACCTTTCTCTAAATTCTTTTGGTGGTTACATCCCTAAAGAATTGTGGACACTGAGTAGTCTACGTAGCCTTGATATTTCCTTGTGCCATCTAAGTGGAGCAATCCCAAATTCCATAGCAAATTTGGCCAATTTATCAGTTCTAAATTTAGGAAGCAACAATCTTTCTGGCTACATTCCTCTAGAGATTGGGAAATTAAAGAGCTTGGAGTCTGTAGATATTGGATACAATCATTTTTTTGGTTCCATTCCACATGAAATTGGAATGTTGACAAATCTTAAGGATATTGATTTGTCACATAACACTTTCTCTGGTAATATCCCTTCTACAATTGGTAACATGAGCAAGTTGAATGAACTTTACCTTGAAGTAAATAACCTCTCTGGGCCAATCCCATCTTCCTTATGGAACCTGACTAACTTATCCTTGCTCTTTCTTAATGACAACAAACTTTTTGGATCAATTCCTTCTTCTATAGGAAATTTGGTCAATTTGAATGTCCTTGAACTATATAACAACCACCTTTATGGATCAATTCCTGTTACTATTGGAAACTTGACAAAGCTCACTGGATTAGGCTTGGACTTAAATGATTTTTCTGGATCAATTCCTGCATCTATAGGAAATCTGATCAATTTGGATTCCCTCACTCTTGAAGGAAATAGACTTTCTGGTTCTATTCCTCCCACTATGGGACATTTGACATTGATCACCATGCTAGGATTGTCCTCTAACAAACTTAATGCTAGCATTCCAAGGGAAATGAATAACATAACCAACTTGTATATCTTACAATTATCTGATAATGATTTCACTGGCTATTTGCCACATCAAATCTGCTCTGGTGGGTCATTAGCATACTTTGCTGCGGATCACAACCATTTAATAGGTCCAATTCCAAGAAGCTTGAAGAACTGTTCTAGTCTAATTTCACCAAACTGGGGGAAGTGCCTTAATCTTGATACCTTTAAGATATCAAATAACAATATTTCTGGTGCCATACCACTTCAACTTGTTGAGGCAAAAAACTTAGGCAGGCTTCACCTTTCTTCAAACCACTTGAGTGGAAACCTTCCTAAAGAACTAGGAAATCTAAAATCATTAGTTGAGGTTAAGATCAACAACAATCATTTCTCAGGAAACATTCCCACAGAAATAGGATTGATAAGGAATCTTCAACACTTGGATTTGGCAAGAAATGAGTTTAGTGGCACAATACCAAATCAAGTTGTGGGGTTACCCAACTTATTGGAATTGAATTTGAGCAACAATAATATAAAAGGAAGCATTCCCTCTGGGTTTAGCCAACTACAGCCTCTTGAATCTCTTGATCTCAATGGCAATCATTTGAGTGGAACAATACCAAGAATAGTTGGAGAGTTGAGGCGCCTGCAATTGTTGAACCTCTCACACAACAATCTTTCTGGAACTATTCCATCTAGTTTTGATGAGATGTCAAGCTTGATTTCTGTTGACATATCTTACAATCAATTAGAAGGGCCACTTCCAAAAAATCAGGCCTTTCTTAAATCCCCTATAGATTCATTGAGAAACAATAAAGGCTTGTGTGGTAATGTTACTGGCTTGGCACTTTGCCCAATCAATCACAGTCCAAAGAGTGTCAAAGTCATGCTATTGGTACTTTTTCTTAGCTTGGGCATATTAATATTTTGTGGTGTGGGAGTTTCAATATACATCCTTAGTGGAAGACAGAGAAAGGAAGAAACTCAAATTGAACAACAAAATGGAGAACTCTTTTCAATATGGAGTTATGATGGGAAAATAATTTATGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGCTGTGGGAGGGCAAGGGTGTGTTTACAAGGTTGAGTTGCCTACAGGCATGGTTGTTGCAGTGAAGAAACTTCACTCTATAACAAATGAGGAAACATCCACTTTCAAAGCTTTTACAAGTGAGGTTCAAGCCTTGACAGAACTCAAACACCGTAACATTGTAAAATTGTATGGATTCTGTTCACATTCACAATTCTCATTTTTGGTTTATGAGTTCTTAGAAGGAGGGAGCCTTGATCAAATACTAAACAATGAGACACAAGCAATGGCATTTGATTGGAAAAGGAGGGTGAATGTTGTAAAAGGTTTGGCTAATGCTTTATCTTATATGCATCATGATTGTTCACCTCCCATAATTCATCGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATCTCTCTGATTTTGGGACAGCTAAGTTTCTGAGGCCTGATTCTTGTAGTTGGACACCACTTGTTGGCACCTTTGGTTATATTGCTCCAGAGCTGGCACAGGCAATGGAAGTGAATGAGAAATGTGATGTTTATAGTTTTGGGATACTTTCTTTAGAAATTCTTATGGGAAAGCATCCAAGAGAACTTATGTCTACATTGTCATCATCATCTACAGCATCAATGGCTTGTAATTTACTGTTGATAGATTTGTTGGATGAACGACTTCCTCAACCTATGAATTCAATAGTTGGTGAGATCATCATGATAGCAAGGTTGGCATTTACTTGCTTGAGTGAACATCCACATTCTCGCCCAACAATGGATCAAGTATCTAAAGAGCTTTTGATTGGAAAATCACCTTTAGCAAACTGGTTCCCTATGATCAAACTTGAACAACTACTCTAA 3093 0.3728 MAQSICWWIFFILLYVPGFSRNASLISSVVYNEITVKHSEVNGLLKWKASFDNHSQALLSSWTGTDPCKWEGILCDKSKFVSSINLANYGLQGTLHTLNFSLFPNLLSLNIHNNSFYGTLPPQIINMSKLNHLNLSLNSFGGYIPKELWTLSSLRSLDISLCHLSGAIPNSIANLANLSVLNLGSNNLSGYIPLEIGKLKSLESVDIGYNHFFGSIPHEIGMLTNLKDIDLSHNTFSGNIPSTIGNMSKLNELYLEVNNLSGPIPSSLWNLTNLSLLFLNDNKLFGSIPSSIGNLVNLNVLELYNNHLYGSIPVTIGNLTKLTGLGLDLNDFSGSIPASIGNLINLDSLTLEGNRLSGSIPPTMGHLTLITMLGLSSNKLNASIPREMNNITNLYILQLSDNDFTGYLPHQICSGGSLAYFAADHNHLIGPIPRSLKNCSSLISPNWGKCLNLDTFKISNNNISGAIPLQLVEAKNLGRLHLSSNHLSGNLPKELGNLKSLVEVKINNNHFSGNIPTEIGLIRNLQHLDLARNEFSGTIPNQVVGLPNLLELNLSNNNIKGSIPSGFSQLQPLESLDLNGNHLSGTIPRIVGELRRLQLLNLSHNNLSGTIPSSFDEMSSLISVDISYNQLEGPLPKNQAFLKSPIDSLRNNKGLCGNVTGLALCPINHSPKSVKVMLLVLFLSLGILIFCGVGVSIYILSGRQRKEETQIEQQNGELFSIWSYDGKIIYENIIEATENFDDKYLIAVGGQGCVYKVELPTGMVVAVKKLHSITNEETSTFKAFTSEVQALTELKHRNIVKLYGFCSHSQFSFLVYEFLEGGSLDQILNNETQAMAFDWKRRVNVVKGLANALSYMHHDCSPPIIHRDISSKNVLLDLEYEAHLSDFGTAKFLRPDSCSWTPLVGTFGYIAPELAQAMEVNEKCDVYSFGILSLEILMGKHPRELMSTLSSSSTASMACNLLLIDLLDERLPQPMNSIVGEIIMIARLAFTCLSEHPHSRPTMDQVSKELLIGKSPLANWFPMIKLEQLL. 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00495 1030 FunFam MDIS1-interacting receptor like kinase 2 819 1016 - -
Seca2g00495 1030 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 289 386 - -
Seca2g00495 1030 Pfam Leucine Rich Repeat 596 616 IPR001611 GO:0005515
Seca2g00495 1030 SUPERFAMILY Protein kinase-like (PK-like) 722 1010 IPR011009 -
Seca2g00495 1030 SUPERFAMILY RNI-like 83 438 - -
Seca2g00495 1030 Gene3D Transferase(Phosphotransferase) domain 1 819 1015 - -
Seca2g00495 1030 ProSitePatterns Tyrosine protein kinases specific active-site signature. 864 876 IPR008266 GO:0004672|GO:0006468
Seca2g00495 1030 SUPERFAMILY L domain-like 439 657 - -
Seca2g00495 1030 FunFam Leucine-rich repeat receptor protein kinase MSP1 703 818 - -
Seca2g00495 1030 PANTHER LEUCINE RICH REPEAT KINASE 2 340 1012 - -
Seca2g00495 1030 Gene3D Phosphorylase Kinase; domain 1 701 818 - -
Seca2g00495 1030 FunFam Leucine-rich repeat receptor-like protein kinase TDR 442 667 - -
Seca2g00495 1030 FunFam Leucine-rich repeat receptor protein kinase EMS1 194 288 - -
Seca2g00495 1030 Pfam Protein kinase domain 746 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00495 1030 ProSiteProfiles Protein kinase domain profile. 740 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00495 1030 Pfam Leucine rich repeat N-terminal domain 39 76 IPR013210 -
Seca2g00495 1030 ProSiteProfiles Leucine-rich repeat profile. 548 570 IPR001611 GO:0005515
Seca2g00495 1030 Gene3D Ribonuclease Inhibitor 37 196 IPR032675 -
Seca2g00495 1030 Gene3D Ribonuclease Inhibitor 206 443 IPR032675 -
Seca2g00495 1030 Gene3D Ribonuclease Inhibitor 444 665 IPR032675 -
Seca2g00495 1030 SMART LRR_typ_2 343 367 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 295 319 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 175 199 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 103 127 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 223 247 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 546 570 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 391 415 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 271 294 IPR003591 -
Seca2g00495 1030 SMART LRR_typ_2 594 617 IPR003591 -
Seca2g00495 1030 Pfam Leucine rich repeat 523 583 IPR001611 GO:0005515
Seca2g00495 1030 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
Seca2g00495 1030 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Seca2g00495 1030 FunFam Nuclear pore complex protein NUP107 37 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00495 Seca-Chr2 7123489 7127284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00495 34 912 Receptor kinase-like Gene Family AT4G08850 42.167 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00495 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00495 - - gmx:100815688 1213.75