Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00488 ATGGCGGACGTCGTCCGAGTCATCTCGAGCACCAGTGTCACAATCCAGGCACCGGAAACTGACTCAACTGAAAACCAGTGTCACAAAATCCATCTAACTCCTTGGGATCTCAAGTTCCTCAAACTTGAGATGAACCGAAAAGGGCTTCTTTTTCACACGGAAGAAAAAGAAGACACACCAATAATAATCCAGCACCTCAAAAACTCCCTCTCCTCCACTCTTGCATTTTTTCCTGTCCTCGCTGGCCGTCTCATCATCACTGAACACCAAGAAAACAACACTGCCTCTTCTTTCATCGCATGCAACAACGTGGGTGCTTTGTTTGTCCACGCTGCCGCAAAGAATACCACTGTTGCTGACATCGTTCAATCCGAATATGTTCCTCCAATTGTTCACTCTTTCTTTGCACTTAACGGAGTTAGCAACTATAAAGGCACATCACAGCCATTGCTGGCGGTGCAGGTTACGGAGCTACTTGACGGTATTTTCATCGGTTTCACAATCAACCATGTGGCAGCAGACGGAGAGTCGTTATGGAATTTTGTGCATTCATGGGCTGAAATCTCACGGGGTGTCCACAAAGGGACGCAGTTAGACAAAATATCCAAACTCCCTGTACTTGAACGTTGGTTTCCAGATGGCATTGACCCTCCCATTCCCTTTCCTTTGACAAAGGAAGAAGAGAAGCAACAAGCCTCTAAAATCTCCAACCCACAACCGCCACAACCAATTCGGATCTTCCATTTCACAAAGGAGAAAATTGCAAAACTAAAATCAAAAGCTAATGCAGATGCCAACACCAACAAAATGTCTTCCCTTCAAGCACTCTTAACTCACCTCTGGCGCTGTGTGGTCCGTTGCCAACGCATTGACCAAGAAAAGGAGACCTATTTCGCCTTACAAATAAGCGTTAGATGGAGAATGGTTCCACCATTGCCAGAGAATTACTTTGGAAACGCGGCAATGTCTGGTGTTGTGAAAATGAAAGCAGGGGAATTACTTGAAGGTGGGTTGGGGAAAGGTGGTTGGGAGATGAATAAGATGATAGGTTTGTATAGTGATGAGAAGGTGAAGAGTCATTATGAGTCTTGGGTGAGAACTCCAGATATTGTTAACATGAGTAGAATGACTGAGGCTGGTACAAGTAGTACGTGTGTCTTGGTCACTAGCAGTTCCCCAAGGTTCAATGTTTATGGTGTTGATTTTGGTTGGGGAAAGCCTGTGGCAGTTCGAAGTGGTAATGCAAATAATATGAATGGAAAGGTCACTTTGTTTGCTGGCGCAGAAGAAGGTAGTATTAACATTGAAGTGTCCCTTTCTCATGAGATTTTGGAGGCCATGGGAAATGACACTGAGTTCATGGATGCCGTTTTCAACTAA 1380 0.4478 MADVVRVISSTSVTIQAPETDSTENQCHKIHLTPWDLKFLKLEMNRKGLLFHTEEKEDTPIIIQHLKNSLSSTLAFFPVLAGRLIITEHQENNTASSFIACNNVGALFVHAAAKNTTVADIVQSEYVPPIVHSFFALNGVSNYKGTSQPLLAVQVTELLDGIFIGFTINHVAADGESLWNFVHSWAEISRGVHKGTQLDKISKLPVLERWFPDGIDPPIPFPLTKEEEKQQASKISNPQPPQPIRIFHFTKEKIAKLKSKANADANTNKMSSLQALLTHLWRCVVRCQRIDQEKETYFALQISVRWRMVPPLPENYFGNAAMSGVVKMKAGELLEGGLGKGGWEMNKMIGLYSDEKVKSHYESWVRTPDIVNMSRMTEAGTSSTCVLVTSSSPRFNVYGVDFGWGKPVAVRSGNANNMNGKVTLFAGAEEGSINIEVSLSHEILEAMGNDTEFMDAVFN. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00488 459 Gene3D - 2 216 IPR023213 -
Seca2g00488 459 Pfam Transferase family 21 454 - -
Seca2g00488 459 Gene3D - 223 449 IPR023213 -
Seca2g00488 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00488 Seca-Chr2 7039955 7043379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00488 64 442 Monolignol Biosynthesis Gene Families AT5G48930 27.226 4.04e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00488 - - gmx:100797643 503.442