Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00464 ATGGCGTTCATCAATAAACTCGGAAGCCTACTCAAGAATTCTGCTGTTAAGCACATCAATCAAGATTTTTCTGTGTCTACTCCTTCGTTATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTTGGAGGTATTTCATATAGCACTGATGATATGAGTCTGCGAGAAGCTTTTGCTCGCTATGGAGAAGTAGTTGATGCAAGGGTTATTATGGATCGTGAAACGGGGAGGTCCAGAGGTTTTGGCTTCATAACTTTTGCATCAAGTGAGGATGCATCTTCTGCCGTTCAGGCGATGGATGGCCAGGTATTATCAGTTTCTGTGATGGATCTTCATGGTCGGAGGATACGAGTGAATTATGCTACTGAAAGGTCACGTCCAGGGTTTGGTGGCGGTGGCTATGGTGGTGGTGGTGGGGGCTATGGTGGCGGCGGCGGCTATGGTGGCGGTGGTGGCTATGGCGGTGGTGGTTATGGTGGTAGTAATTATGGAGGTAATGATAACAATAGGGGTGGAAGCTATGCTAGCAGTGGTTATGGTGTTACTGGCGGTGGCAGCTATGGCAGCAGCAATTCGGAAACTAGTTACACTGGTGGTGCTGCTAGCAGTTACCAATTCAATGAAAATTCTGGTGGATTTGGTAGCAACCAAAATGACAGAACAAGTGCAGATGCTGATGAATTCATGGAGCCACTTGAAGACAATGATGTGAGGGAGAACAATGATGAACCTGATGACTATGCTCAGACAAAGAGGTGA 765 0.4627 MAFINKLGSLLKNSAVKHINQDFSVSTPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFASSEDASSAVQAMDGQVLSVSVMDLHGRRIRVNYATERSRPGFGGGGYGGGGGGYGGGGGYGGGGGYGGGGYGGSNYGGNDNNRGGSYASSGYGVTGGGSYGSSNSETSYTGGAASSYQFNENSGGFGSNQNDRTSADADEFMEPLEDNDVRENNDEPDDYAQTKR. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00464 254 MobiDBLite consensus disorder prediction 188 224 - -
Seca2g00464 254 SUPERFAMILY RNA-binding domain, RBD 24 157 IPR035979 GO:0003676
Seca2g00464 254 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 143 - -
Seca2g00464 254 CDD RRM2_NsCP33_like 41 123 - -
Seca2g00464 254 Gene3D - 15 149 IPR012677 -
Seca2g00464 254 PRINTS Eggshell protein signature 180 198 - -
Seca2g00464 254 PRINTS Eggshell protein signature 36 52 - -
Seca2g00464 254 PRINTS Eggshell protein signature 155 165 - -
Seca2g00464 254 PRINTS Eggshell protein signature 130 145 - -
Seca2g00464 254 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 211 - -
Seca2g00464 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 125 IPR000504 GO:0003723
Seca2g00464 254 SMART rrm1_1 41 121 IPR000504 GO:0003723
Seca2g00464 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 106 IPR000504 GO:0003723
Seca2g00464 254 MobiDBLite consensus disorder prediction 188 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00464 Seca-Chr2 6682916 6686974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00464 9 119 Eukaryotic Initiation Factors Gene Family AT3G16380 33.621 3.71e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00464 K12741 - gmx:100818300 294.664