Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00451 ATGGCTTCAACCAATGGCCGTAAAGCAAGTGAGATCTTTCAAGGTCAAGCTCTCTTGTACAGACACATATTTGCCTTCATAGACTCTATGTGTCTTAAATGGATTGTTGAGCTTAGCATACCAGACATAGTCCACAACCATGGCAAACCCATTACCCTTACAGAGTTGGTATCAATTCTGCAAGTTCCACAAGGAAAAGTTAGTAATGTGCAGCGTCTCATGTGCTACTTGGCACATAATGGATTCTTTGAGATAGTAAGAATCCAGGAAGAAGAAGAAAAGGAAGCATATGCTCTCACTGCAGCATCAGAGCTCCTTGTTAAGGGCACTGACCTCTGTTTAGCCCCAATGGTTGAGGCTGTTCTTGACCCTACTCTGTCAGGTTCATACCATCTCTTGAAGAAGTGGATTTATGAGGAAGATCTCTCACTCTTTGCTGTCTCCTTAGGATCAGGATTTTGGGACTTTCTTAACAAAAATCCTGAATATAACAGGTCATTCAATGAGGCTATGGCTAGTGATTCTCGGATGATAAACTTGGCACTGAAAGATTGCAATTTGGTATTTGAGGGACTTGAATCCATTGTGGATGTGGGTGGTGGAACTGGGACCACAGCCAAGATTCTGTGTGAGACATTTCCAAAGTTGAAATTTGTAGTGTTTGATCGTCCGCAGGTCGTGGGAAACTTGTCAGGAAGCAACAATATGACTTATGTTGGTGGGGACATGTTCAATTCTATTCCTAAGGCTGATGCTGTTCTACTTAAGTGGATTTTGCATAATTGGACTGATAAAGATTGCACAAAGATATTGGAAAAATGTAAAGAAGCTATTTCAAGTAGTGAGAAAAGAGGAAAAGTAATTATCATAGATGTTGTGATAAATGAAAAGAAGGATGAGCATGAAATCACTGGAACAAAGCTCCTTATGGATATAAACATGGCTTCTCTTAATGGAAAAGAGAGAAATGAAGAAGAATGGAAGAAACTCTTCACCGAAGCAGGGTTCCAAGACTACAAAATAACTCCTTTGACTGGAATTTTATCTCTTATTGAGGTCCATCCTTAA 1068 0.3998 MASTNGRKASEIFQGQALLYRHIFAFIDSMCLKWIVELSIPDIVHNHGKPITLTELVSILQVPQGKVSNVQRLMCYLAHNGFFEIVRIQEEEEKEAYALTAASELLVKGTDLCLAPMVEAVLDPTLSGSYHLLKKWIYEEDLSLFAVSLGSGFWDFLNKNPEYNRSFNEAMASDSRMINLALKDCNLVFEGLESIVDVGGGTGTTAKILCETFPKLKFVVFDRPQVVGNLSGSNNMTYVGGDMFNSIPKADAVLLKWILHNWTDKDCTKILEKCKEAISSSEKRGKVIIIDVVINEKKDEHEITGTKLLMDINMASLNGKERNEEEWKKLFTEAGFQDYKITPLTGILSLIEVHP. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00451 355 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Seca2g00451 355 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Seca2g00451 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Seca2g00451 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca2g00451 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 353 IPR029063 -
Seca2g00451 355 Pfam O-methyltransferase domain 130 337 IPR001077 GO:0008171
Seca2g00451 355 Gene3D - 1 106 IPR036388 -
Seca2g00451 355 PANTHER O-METHYLTRANSFERASE 15 340 IPR016461 GO:0008168
Seca2g00451 355 FunFam O-methyltransferase ZRP4 108 355 - -
Seca2g00451 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Seca2g00451 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00451 Seca-Chr2 6343745 6345341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00451 25 353 Monolignol Biosynthesis Gene Families AT5G54160 30.655 1.24e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00451 K22588 K13262 ag:AAC49926 558.525