Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00443 ATGATTAATAGCCCAAAAGAATCAGATTTTCCATTGAAACAAGAAGGTCATTCAAGTGATGATCATGAAAAAGCATCAAAAGTAGCTTCATCATCATCAGCATCACAATGGCCAAGATTGAAGGATCCAAGGATTGTAAGAGTATCTAGAGCCTTTGGAGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGACAGACGTGTGAGGCTTTCAGTGCCAACTGCTATCCAACTTTATGATCTTCAAGATAGGTTAGGGCTCAATCAGCCTAGCAAGGTTGTTGATTGGTTACTCAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCTAATATTCCACCACCAGGGAATACCTTCACTTTTACTAATTATCCATCTTCTCTTATTAATCAAGCTTCTGCTTCCACCTCTCATCAGCCTAATGATCAACTGTTCAACATCAATAGGAGCATTCATCAATGGGAAGGTAATTCAAGCCAAAATTCAATGTGGAAATTGAGGACTAAAGAAGTTTCAGGAGATATGGTTCTTGAAGAGGATGGTGCTAATAAGGAAGGGAGTAGCAATAATGAAGGTCCTTATTGTGCACATGTTTTGCCAAATAATAATCTCTTGCAAAGAGCTAATCATCATCACCCTTCATTCCTTGGATTGCTAAATACTATGCCACTTGGTTACCAATGGGAGCCTTCAAGTGATGTTAATTCTTCTCATCAGTTGGGAAATAACAATAATGGATTATTCATCACAAACCAAACAGATATACAAAGCACTAATGTTGTGCCTTTTCCATCAAGTTTGTCTTTGTCAACTGGGAATTCTCAAATTCTGGTGTGTCCTCCTGGAACAACACAGTCATATTTCCCTTCACATGTTACAGCAATGGATTTGGATCCCAGACAAATCAATCATTATCAGATGTTGAGTTCTTCATCTGGTTCTCATCATCAAAATCTGTTGACAAATTCTCTCAATAATCCTTCTTTCATGAGCTTGGCTATGATGACTCCAAAACTTCTCCATTCACCAAACAACAGTGAAAGTCCATCACATAAAGATCAAGATTTCACTTCCAAGTGA 1098 0.3789 MINSPKESDFPLKQEGHSSDDHEKASKVASSSSASQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPNIPPPGNTFTFTNYPSSLINQASASTSHQPNDQLFNINRSIHQWEGNSSQNSMWKLRTKEVSGDMVLEEDGANKEGSSNNEGPYCAHVLPNNNLLQRANHHHPSFLGLLNTMPLGYQWEPSSDVNSSHQLGNNNNGLFITNQTDIQSTNVVPFPSSLSLSTGNSQILVCPPGTTQSYFPSHVTAMDLDPRQINHYQMLSSSSGSHHQNLLTNSLNNPSFMSLAMMTPKLLHSPNNSESPSHKDQDFTSK. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00443 365 MobiDBLite consensus disorder prediction 10 27 - -
Seca2g00443 365 MobiDBLite consensus disorder prediction 345 365 - -
Seca2g00443 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 327 IPR005333 GO:0003700
Seca2g00443 365 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Seca2g00443 365 Pfam TCP family transcription factor 54 175 IPR017887 -
Seca2g00443 365 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00443 Seca-Chr2 6150457 6152914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00443 37 313 TCP Transcription Factor Family AT3G02150 40.753 1.68e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca2g00443 TCP 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00443 - - gmx:100816424 451.055