LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g00443	ATGATTAATAGCCCAAAAGAATCAGATTTTCCATTGAAACAAGAAGGTCATTCAAGTGATGATCATGAAAAAGCATCAAAAGTAGCTTCATCATCATCAGCATCACAATGGCCAAGATTGAAGGATCCAAGGATTGTAAGAGTATCTAGAGCCTTTGGAGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGACAGACGTGTGAGGCTTTCAGTGCCAACTGCTATCCAACTTTATGATCTTCAAGATAGGTTAGGGCTCAATCAGCCTAGCAAGGTTGTTGATTGGTTACTCAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCTAATATTCCACCACCAGGGAATACCTTCACTTTTACTAATTATCCATCTTCTCTTATTAATCAAGCTTCTGCTTCCACCTCTCATCAGCCTAATGATCAACTGTTCAACATCAATAGGAGCATTCATCAATGGGAAGGTAATTCAAGCCAAAATTCAATGTGGAAATTGAGGACTAAAGAAGTTTCAGGAGATATGGTTCTTGAAGAGGATGGTGCTAATAAGGAAGGGAGTAGCAATAATGAAGGTCCTTATTGTGCACATGTTTTGCCAAATAATAATCTCTTGCAAAGAGCTAATCATCATCACCCTTCATTCCTTGGATTGCTAAATACTATGCCACTTGGTTACCAATGGGAGCCTTCAAGTGATGTTAATTCTTCTCATCAGTTGGGAAATAACAATAATGGATTATTCATCACAAACCAAACAGATATACAAAGCACTAATGTTGTGCCTTTTCCATCAAGTTTGTCTTTGTCAACTGGGAATTCTCAAATTCTGGTGTGTCCTCCTGGAACAACACAGTCATATTTCCCTTCACATGTTACAGCAATGGATTTGGATCCCAGACAAATCAATCATTATCAGATGTTGAGTTCTTCATCTGGTTCTCATCATCAAAATCTGTTGACAAATTCTCTCAATAATCCTTCTTTCATGAGCTTGGCTATGATGACTCCAAAACTTCTCCATTCACCAAACAACAGTGAAAGTCCATCACATAAAGATCAAGATTTCACTTCCAAGTGA	1098	0.3789	MINSPKESDFPLKQEGHSSDDHEKASKVASSSSASQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPNIPPPGNTFTFTNYPSSLINQASASTSHQPNDQLFNINRSIHQWEGNSSQNSMWKLRTKEVSGDMVLEEDGANKEGSSNNEGPYCAHVLPNNNLLQRANHHHPSFLGLLNTMPLGYQWEPSSDVNSSHQLGNNNNGLFITNQTDIQSTNVVPFPSSLSLSTGNSQILVCPPGTTQSYFPSHVTAMDLDPRQINHYQMLSSSSGSHHQNLLTNSLNNPSFMSLAMMTPKLLHSPNNSESPSHKDQDFTSK.	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca2g00443	365	MobiDBLite	consensus disorder prediction	10	27	-	-
Seca2g00443	365	MobiDBLite	consensus disorder prediction	345	365	-	-
Seca2g00443	365	PANTHER	TRANSCRIPTION FACTOR TCP4-RELATED	14	327	IPR005333	GO:0003700
Seca2g00443	365	ProSiteProfiles	TCP domain profile.	54	112	IPR017887	-
Seca2g00443	365	Pfam	TCP family transcription factor	54	175	IPR017887	-
Seca2g00443	365	MobiDBLite	consensus disorder prediction	1	40	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g00443	Seca-Chr2	6150457	6152914	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g00443	37	313	TCP Transcription Factor Family	AT3G02150	40.753	1.68e-48	166

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TCP	Seca2g00443		TCP	2.7e-28	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g00443	-		-	gmx:100816424	451.055

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