Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00423 ATGTTTCTCAAGTATTTAGGTTTCTGTCGTTCGAACCATACAAGATCATCTCAGAGACAGTATCCAACTGTAATAGAAGAGCTATGCCATCAGTTTTCTCTGTCAGATATTACGAAATCAACCAACAACTTTGATAAAAATCTAATACTTGGAGAAGGAGACGCTTGTACAGTATACAAAGGATGTTTGCTGTACAATGGAACTAATGATTATACAGTCGCAATCAAACGAATTTATGCAAATACAGAAAAGGAAATCAAAGAGTTCGAAAAGGAAATTGAGATGCTCTGCCAACTTCACCATCCTAATTTGATGACTTTAATTGGATATTGTGACAGCAAAAATGAGAAGATTATTGTGTATGAGTATGTGGCTAATGGAGCTCTCTATTATCGCCTATCTAATGGTATAAACAAGGAACCACTCTCATGGAAGCAAAGGGTAAAGATCTGCATAGGAGCAGCACGTGGACTACACTTTCTTCATGCTGGAGCCAAGCGCACCATCTTTCATCGTGACATACAACCTCTTAAAATTTTATTGGATGAAAATATGGTGCCCAAACTCTCAGACTTGAGGGTTTCATTACAGGGACCTCTGTGTACATATTGTTACGTGGCTCCTGAGGTTTTACAAAACAAGACAGTAACAGATAAGTGTGATGTTTACTCCTTTGGCATGGTTCTGCTAGAAGTGGTATGCACGGACAAGAGGCACCCTGTGGAGGAGAATATTGATCCGAACATCAAAGGAAAGATTGCAGCAGAGTGTTGGGAAGTGTTTGTGGATGTCACAGAGAGATGCTTGAAGCATGATCCATATGAGAGACCAGCAATGGGTGAAGTAGAGGTGCAACTTGAGCTTGCTCTGTCACTGCAGGAAGAAGCAGACATCAGGAACACTAGAGGTGATCATTATACCTTATTATCTACAACAATTTTTGATCCTCCACCAGACAGAGAATTGAAAGAGTTCCAGAATGAAATTGAGTTACTCTGCCAACTTCGTCATCCTAATTTGGTCACTTTATTGGGATATTGTGACCACAAAGACGAGAAGATTATTGTCTACAAGTACATGGCCAATGGAGCCCTCTATGATAGATTATATAATGATATTAACAAGAGACCACTTTCATGGAATCTAAGGGTAAAGATCTGCATAGGAGCAGCACGTGGACTACACTTTCTTCACACAGGAGCCAAGCGCACCATCTTTCATAGGCACCCTGTGGAGGAGAATATTGATCCGAACATCAAAGGAAAGATTGCAGCAGAGTGTTGGGAAGTGTTTGTGGATGTCACAGAGAGATGCTTGAAGCATGATCCATATGAGAGACCTGCAATGGGTGAAGTAGAGATGCAACTTGAGCTTGCTCTGTCACTGCAGGAAGAAGCTGATACCAGAAACACTGTTGGTGATCCTTACACCTTATTAACTACAACCATCATTGATCCTCCACCAGAAGAGGCGTCAATTTTAGCCAAAAAGTTAACTTGA 1500 0.408 MFLKYLGFCRSNHTRSSQRQYPTVIEELCHQFSLSDITKSTNNFDKNLILGEGDACTVYKGCLLYNGTNDYTVAIKRIYANTEKEIKEFEKEIEMLCQLHHPNLMTLIGYCDSKNEKIIVYEYVANGALYYRLSNGINKEPLSWKQRVKICIGAARGLHFLHAGAKRTIFHRDIQPLKILLDENMVPKLSDLRVSLQGPLCTYCYVAPEVLQNKTVTDKCDVYSFGMVLLEVVCTDKRHPVEENIDPNIKGKIAAECWEVFVDVTERCLKHDPYERPAMGEVEVQLELALSLQEEADIRNTRGDHYTLLSTTIFDPPPDRELKEFQNEIELLCQLRHPNLVTLLGYCDHKDEKIIVYKYMANGALYDRLYNDINKRPLSWNLRVKICIGAARGLHFLHTGAKRTIFHRHPVEENIDPNIKGKIAAECWEVFVDVTERCLKHDPYERPAMGEVEMQLELALSLQEEADTRNTVGDPYTLLTTTIIDPPPEEASILAKKLT. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00423 499 ProSiteProfiles Protein kinase domain profile. 284 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00423 499 Pfam Protein tyrosine and serine/threonine kinase 49 285 IPR001245 GO:0004672|GO:0006468
Seca2g00423 499 Pfam Protein tyrosine and serine/threonine kinase 320 409 IPR001245 GO:0004672|GO:0006468
Seca2g00423 499 Gene3D Phosphorylase Kinase; domain 1 312 360 - -
Seca2g00423 499 Gene3D Phosphorylase Kinase; domain 1 5 123 - -
Seca2g00423 499 ProSiteProfiles Protein kinase domain profile. 44 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00423 499 PANTHER OS07G0166700 PROTEIN 411 463 IPR045272 GO:0004714|GO:0006468
Seca2g00423 499 FunFam Receptor-like protein kinase ANXUR2 9 123 - -
Seca2g00423 499 Coils Coil 72 99 - -
Seca2g00423 499 Gene3D Transferase(Phosphotransferase) domain 1 124 308 - -
Seca2g00423 499 Gene3D Transferase(Phosphotransferase) domain 1 361 409 - -
Seca2g00423 499 Gene3D Transferase(Phosphotransferase) domain 1 410 476 - -
Seca2g00423 499 SUPERFAMILY Protein kinase-like (PK-like) 319 461 IPR011009 -
Seca2g00423 499 SUPERFAMILY Protein kinase-like (PK-like) 19 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00423 Seca-Chr2 5898186 5906285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00423 406 467 Receptor kinase-like Gene Family AT3G51550 38.710 1.25e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca2g00423 PK_Tyr_Ser-Thr 6.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00423 - - gmx:100779112 429.483