Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00403 ATGCTGTTCTGGGTAACAAGGTGGTCTACAATAGCAAAGTACTTGCCGGGTAGAACTGATAACGAGATAAAGAACTACTGGAGAACCCACTTTGGGAAGAGAGAGAAAAATAATAAGAAGAAGTTTGAAAGCAGGCGAAGAACAAAAGTGGTAAAGCAGTTGAAATTACAAGAGCAGAAACACGATCAATACGACATCAAAAGCATGTCGTCTCATGAGGAGACCAAAAATGAAACAAGAAGAAAATTATCTCCTGAGGCGGAGACACAGACACAAGGCATGGATTACCAATTTAGCCTCCCTTCAATAATGCATCATCAAGACACGTGGCCAGATGATGATGGCCTATGGTTTAGTTTGTGGGAGTTTGATGAACCACCGCAAGGTTTTGCCATGCCAATGCCAAATCAAGAATATAGCTTTGGAAATGGAGGGGATTTTTTGATGCAAAACTTCTCATTTTGGTGA 468 0.4103 MLFWVTRWSTIAKYLPGRTDNEIKNYWRTHFGKREKNNKKKFESRRRTKVVKQLKLQEQKHDQYDIKSMSSHEETKNETRRKLSPEAETQTQGMDYQFSLPSIMHHQDTWPDDDGLWFSLWEFDEPPQGFAMPMPNQEYSFGNGGDFLMQNFSFW. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00403 155 MobiDBLite consensus disorder prediction 37 90 - -
Seca2g00403 155 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 35 IPR017930 -
Seca2g00403 155 ProSiteProfiles Myb-like domain profile. 7 31 IPR001005 -
Seca2g00403 155 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 91 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca2g00403 155 MobiDBLite consensus disorder prediction 49 85 - -
Seca2g00403 155 Gene3D - 3 34 - -
Seca2g00403 155 Pfam Myb-like DNA-binding domain 7 30 IPR001005 -
Seca2g00403 155 CDD SANT 7 31 IPR001005 -
Seca2g00403 155 SUPERFAMILY Homeodomain-like 6 38 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00403 Seca-Chr2 5538781 5539501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00403 3 144 MYB Transcription Factor Family AT3G30210 33.333 9.25e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca2g00403 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00403 K09422 - gmx:100816944 144.821