Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00402 ATGGGAAGGGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTCTAGCACCTCTAACATGCTCAAGACTCTTGATAGATACCAGAAATGCAGTTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAACTTGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGGGAAGACTTGGGCCCACTGAATTCCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTGAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGATGCAAACAGAACCTTAACAATGAAGCTGGATGAAATCAATTCAAGAAATCAATACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCCTATGGTGGTCCACAGAATGCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAATCCCACATTGCAGATTGGTCCTGACTACAGGTACAACACTGTAGCTACAGATCAGATAACTGCCACAACTCAAGCTCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTGA 750 0.4333 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSNMLKTLDRYQKCSYGAVEVSKPAKELEQSSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVDANRTLTMKLDEINSRNQYRQSWEAGDQSMPYGGPQNAHSQGFFQPLECNPTLQIGPDYRYNTVATDQITATTQAQQVNGFIPGWML. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00402 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca2g00402 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca2g00402 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca2g00402 249 Coils Coil 125 145 - -
Seca2g00402 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca2g00402 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca2g00402 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca2g00402 249 FunFam MADS-box transcription factor 1 13 88 - -
Seca2g00402 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca2g00402 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca2g00402 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Seca2g00402 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca2g00402 249 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca2g00402 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Seca2g00402 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00402 Seca-Chr2 5507791 5513541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00402 1 249 MADS-box Gene Family AT5G15800 75.000 1.36e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca2g00402 K-box 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00402 K09264 - gmx:100786066 449.899