Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00397 ATGGGTTCTGTTTGTTCTTGTTTGAGTGTTGATGATTTTGAAGATTATATGAATCCAAATAGTCATGTATATAGGAACTGTGTGTGTCTTGGCTGCTTCGTGCAGAACTTCTTGAATGTGTATGCATCAATATTCCGTAGAGGGGAAGTGCATTCGATTCCTTCATCTATACAAGGAGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCTCTTTCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTATTTCCGCTCACAGCATGATGGGCTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAAGAAGTGATGCAGATATGGACCCAGAATCTTTAAATTCAGGTGATAAGTGGAATGGAAGTACTGGCGAAGATGGATCAAAGGAATACCATTCTAAGTCCTCAGTCAGACTTTCATCTGCCAAACTTACAACTGGAACCGATCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGGAAGGTAATATTTACTTGA 672 0.4122 MGSVCSCLSVDDFEDYMNPNSHVYRNCVCLGCFVQNFLNVYASIFRRGEVHSIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFRSQHDGLVSRREKGSSHLNEESEPLRSDADMDPESLNSGDKWNGSTGEDGSKEYHSKSSVRLSSAKLTTGTDLVYASSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVIFT. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00397 223 CDD RING-H2_AIRP1-like 173 221 - -
Seca2g00397 223 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Seca2g00397 223 SMART ring_2 177 217 IPR001841 -
Seca2g00397 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 222 IPR013083 -
Seca2g00397 223 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 223 - -
Seca2g00397 223 MobiDBLite consensus disorder prediction 99 128 - -
Seca2g00397 223 MobiDBLite consensus disorder prediction 99 154 - -
Seca2g00397 223 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Seca2g00397 223 SUPERFAMILY RING/U-box 172 222 - -
Seca2g00397 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 221 - -
Seca2g00397 223 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00397 Seca-Chr2 5455579 5457056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00397 1 221 C3H Transcription Factor Family AT5G15790 61.062 2.77e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00397 - - gmx:100788192 407.142