Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00353 ATGTTGGAGAAGGAACTCTCCACCACCACCACTGCCGCTGCTACATGGGCACGTATCTGTGACACGTGCCGCTCTGCCGCATGCACGGTTTTCTGCCGTGCCGACTCGGCGTACTTGTGCGTCGGGTGCGACGCACGCGTGCATGCGGCAAACCACGTCGCCTCGAGGCACGAGCGCGTGTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCGTTTTTATGTAAGGCTGATGCAGCCTCACTCTGCTCTTCCTGTGATGCTGACATCCACTCTGCCAATCCTCTTGCCAGCCGCCACCAGCGTGTCCCTATTCTTCCCATCTCTGGCTGCCTCTATGGCCCCTCTGCTACCCTTTTGGGTGCTGAAGATGATGGCTTTGTTGGTGGTGGTGAGATGGAGGAAGAGGAGGATGAAGGTGTTGATGTTGAGGATGAAGATGAAGCAGCTTCATGGCTGTTGCTGAATCCTATGAAGAACAGTAGCACAAACAACAACAATGAACACAATCAGCAGGGTAATGGGTTCTTGTTTAATGGGGAGGTTGATGAGTATTTGGACCTTGTTGATTGTAATTCATGTGGTGACAACCAGTTCACTACAAATGCTACTGATCATTACAGTCATCATCAACATCAGCATCAGCAGCAACAACATTATGGTGTTCCTCAGAAGAGCTATGTTGGGGATAGTGTGGTTCCAGTTCAGCAACAACAGCAGGCACATCATTTTCAGCTTGGATTGGAGTTTGAGTCCTCAAAAACTGGGTTCAGTTACAATGGTTCTATTACTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGGGATGTTTCAAATTCCTACTCAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGATGGCTTCCCATCTCACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGCATAAAAGGACGATTTGCCAAGAGAACTGATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACACTAATGACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1158 0.4879 MLEKELSTTTTAAATWARICDTCRSAACTVFCRADSAYLCVGCDARVHAANHVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGCLYGPSATLLGAEDDGFVGGGEMEEEEDEGVDVEDEDEAASWLLLNPMKNSSTNNNNEHNQQGNGFLFNGEVDEYLDLVDCNSCGDNQFTTNATDHYSHHQHQHQQQQHYGVPQKSYVGDSVVPVQQQQQAHHFQLGLEFESSKTGFSYNGSITQSVSVSSMDVGVVPESTMRDVSNSYSRPPKGTIDLFSGPPIQMASHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLMTEVGYGIVPSF. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00353 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 375 IPR045281 GO:0009909
Seca2g00353 385 SMART bboxneu5 63 105 IPR000315 GO:0008270
Seca2g00353 385 SMART bboxneu5 15 62 IPR000315 GO:0008270
Seca2g00353 385 CDD Bbox1_BBX-like 19 62 - -
Seca2g00353 385 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Seca2g00353 385 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
Seca2g00353 385 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Seca2g00353 385 CDD Bbox1_BBX-like 62 105 - -
Seca2g00353 385 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Seca2g00353 385 Pfam CCT motif 316 358 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00353 Seca-Chr2 4895729 4898779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00353 1 385 C2C2-CO-like Transcription Factor Family AT3G02380 56.061 6.97e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca2g00353 zf-B_box 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00353 K12135 - tpra:123889374 532.717