LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g00352	ATGGGGACGCCAAGAAGAGTAGCTGCTCTTTGTTTTGCATTTTTCTGGTTTTGGAGCTCTGCAAATGCCTTGCTTTCTCCTAAAGGGGTAAACTTTGAAGTTTTGAATTGGGGTCCCTCTTTCTCTCTGTGTCTAAATACAGTGCAAGCTTTAATGGCTATAAAAGATTCTTTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGTGATGCAGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTAGTGAAAACTTGGTCATTGGCTTGGGCACTCCAAGTCAAAGTTTGTCTGGTACTCTATCTTCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGTTGCTACAGAATAACAACATAAGTGGACCAATCCCTTTAGAGCTAGGCAAACTCCCTAGGCTTCAAACACTTGATCTCTCTAATAACTTCTTCAGTGGGGAAATTCCTTCCACTCTTGGTCACCTCAGAAGCCTTCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGTCCAGAATCACTGGCTAACATGACACAGCTTGCTTTTCTTGATTTGTCTTACAACAATCTTAATGGTCCGGTACCCAGAATTTTGGCCAAATCATTCAGCATTCTTGGCAACCCCCTTATTTGTGCTACTGGAAAAGAGCCAAACTGCCATGGGATGACACTGATGCCCATGTCCATGAACTTAAACAATACTGAAGATGCTTTACCATCAGGCAGACCAAAAACTCATAAAATGGCCATTGCCTTTGGCTTGAGCCTGGGATGTCTCTGCCTAATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTTAAAGACCGGCACCATGAAGAAGTCTACCTTGGAAACCTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATACTGGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCCCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCTATTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAACCTCCTCAGACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTAGTCTATCCATACATGTCCAATGGAAGTGTTGCTTCCCGTTTGAAGGGTAAGCCAGTCCTGGACTGGGGCACAAGGAAGAATATTGCTTTGGGAGCAGCAAGGGGACTACTTTACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCTAACATATTGCTTGATGACTATTGTGAAGCTGTAGTTGGAGATTTTGGATTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACTGTGGGGCATATTGCCCCAGAATATCTATCCACAGGACAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAATTAATCACAGGCCTAAGAGCCTTAGAATTTGGAAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTTGAATTGCTTGTAGACAAGGATCTCAAGAGTAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATACCTTCCAGGCCACAGACCAAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGGTTAGCAGAAAGATGGGAAGCTTCTCAAAGGGCTGACACAACCAAGTGCAAACCTCCCCATGAGTCCTCTTCATCAGATAGGTATTCTGATCTTACTGATGACTCTTTATTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGGTGA	1917	0.4309	MGTPRRVAALCFAFFWFWSSANALLSPKGVNFEVLNWGPSFSLCLNTVQALMAIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSSSIGNLTNLQIVLLQNNNISGPIPLELGKLPRLQTLDLSNNFFSGEIPSTLGHLRSLQYLRLNNNSLVGECPESLANMTQLAFLDLSYNNLNGPVPRILAKSFSILGNPLICATGKEPNCHGMTLMPMSMNLNNTEDALPSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSNKNILGKGGFGNVYKGVLPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTTKCKPPHESSSSDRYSDLTDDSLLLVQAMELSGPR.	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g00352	638	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	41	597	-	-
	Seca2g00352	638	Pfam	Protein kinase domain	318	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00352	638	ProSitePatterns	Protein kinases ATP-binding region signature.	323	345	IPR017441	GO:0005524
	Seca2g00352	638	FunFam	Somatic embryogenesis receptor kinase 1	286	393	-	-
	Seca2g00352	638	MobiDBLite	consensus disorder prediction	597	618	-	-
	Seca2g00352	638	Pfam	Leucine rich repeat	135	195	IPR001611	GO:0005515
	Seca2g00352	638	ProSiteProfiles	Protein kinase domain profile.	317	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00352	638	SUPERFAMILY	Protein kinase-like (PK-like)	294	587	IPR011009	-
	Seca2g00352	638	FunFam	Somatic embryogenesis receptor-like kinase 1	394	606	-	-
	Seca2g00352	638	SMART	serkin_6	317	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00352	638	MobiDBLite	consensus disorder prediction	597	622	-	-
	Seca2g00352	638	Gene3D	Phosphorylase Kinase; domain 1	286	393	-	-
	Seca2g00352	638	Gene3D	Ribonuclease Inhibitor	46	226	IPR032675	-
	Seca2g00352	638	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	45	226	-	-
	Seca2g00352	638	Pfam	Leucine rich repeat N-terminal domain	48	84	IPR013210	-
	Seca2g00352	638	Gene3D	Transferase(Phosphotransferase) domain 1	394	606	-	-
	Seca2g00352	638	SUPERFAMILY	L domain-like	46	209	-	-
	Seca2g00352	638	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g00352	Seca-Chr2	4877944	4882404	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g00352	10	638	Receptor kinase-like Gene Family	AT5G16000	78.179	0.0	996

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Seca2g00352		Pkinase	1.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g00352	-		-	gmx:100798412	1142.49