Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00341 ATGGGTTTTGGAGTTAGAAAAAATTACTTCAACAAAAGGAAGAAAGATGGTTCCATTACATCTTGTAGATTTGTTTGTTGTAAGGAGGGGAAGAAGAATAACAAACCATCCTTGGTTAAAAAGCCCAGGGCTGATACAAGAACTGAGTGTCAAGCAAGAATAGCACTTGTTGCGAAAAATGGCAAGGCATATGAGATTAAAATGGCAGAGGACTCTGGATTGATGCAAAAGGCTTCATTTCAGCTTATGAGCACGCATGCAGGAGGTAGAGCTAATCTTGGATATACACGGTTGGATGTGAAGAACTATCTCCAAGCAAGAAGACAACGTAGCATGGTGTATGGGGAAGCCGGTTGTCTCTTACAGTATTTTCAACGGCAACTTTTGGAGAATCCATCATTTTACCATGCATATCAAATGGATTGTGATGAACAAATCATAAACGTATTTTGGGCCGATGCAAAAATGATCCTGGACTATGGATTCTTTGGTGATGTTGTCTCTTTGGATACAACATATTGCACCAACCGTGCTAATAGACCACTAGCTTTGTTTTCAGGCTTCAATCATTATAGGGGTACAATCATTTTTGGGGCTGCATTATTATATGATGAGACTGCTGATTCATTCAGATGGTTATTTGAAACATTCCTTGAAGCACATGGGAAGAAGAAGCCTCAAACTTTGTTCACTGACCAAGACCAAGCAATGGCTAAAGCACTAACTAAAATGATGCCAGAGACTCGACATGGTTTATGCACATGGCATTTAATGCAGAATGGAATCAAACATCTTGGAAACTTGATGAAGAGAGGAAGCCATTTCTTGACTGATTTCAAAAAGTGTATGTATGATTATAACCAAGAAGCGAAGTTTGAGGCGGCTTGGAGTAAGTTGGTCATAGAATTTAATGTCAATGAAAATAACTGGGTGAAATCAATGTATGCTATTAAGGAAAAGTGGGCAGCATGTCACATGAAGGAAGCCTTCACCTTAGGTATGCGAAGCACTCAACTTAGTGAGAGTTTGAACTCAAATTTTAAGGCTTGCATGAGACCGAACCTCAATGTCACTCAATTCTTCAAGGACTTCGAAAGAGTTGTTGAGAAGAAGCGATACAATGAGTTGGTTTGTGAATATGAGTCTCGACATAAACTTGCAAAGTTGAGATATGAACATTCTCCAATGCTACTAAATCTTGCAGAGGTATACACACCTATAATTTTTGATGTGTTTACTAATGAGTTTGCTTTATTTTTAGCTGCTTGCATACGAGAAAGGGATGTATCTCAAATTCCGTTTGAGTATGTCATTACCTTGGTCAATGAGGAAGGAGAGTGGAGAGTGTTATTTGATCCAATACAAATCTCCATATCATGTAGTTGTAGAAAATTTGAGACATTTGGGATACTTTGTTGCCATGCATTGAAGGTGTTCGAGGCAAATGATATTAAACTTGTTCCCAATCAATACATCCTAAAGAGGTGGACAAGAGATGCACGCAATGGTATTATACTGGACACAAGGAAAAATGAGGTTGTGGCAGATCCCAAATTAGATAGCACACGGCGATATAAGCAAGTTTGCCTCTCTATGATTAGATTAGCAGCTGAGGTCTCTACTTCTGAAAAATTGCACCAAATTGTAGAACAAGGAATTCATGACTTGTGGAAGAAAGTAAAGGAGGTTCGGTTAGAAGATAATATAATGGCCAATGATGAATATAGTGCTCCGATACTAGCAAGAGAAGATGAGACACAAGTAAAGGGGTTTAAGGAGCGAGTTGGGCCGAGGAGACACAAACGACTAAAAGGTTGGGTTGAGCTTCAATCTACAAAAAAAAGAAAGGCTACACCAAGTCAACAACATATGGTATATAATTTTATGGTTATAACAATATTTGTGTTGCCTTTCTTACCTATTTATTAA 1929 0.3836 MGFGVRKNYFNKRKKDGSITSCRFVCCKEGKKNNKPSLVKKPRADTRTECQARIALVAKNGKAYEIKMAEDSGLMQKASFQLMSTHAGGRANLGYTRLDVKNYLQARRQRSMVYGEAGCLLQYFQRQLLENPSFYHAYQMDCDEQIINVFWADAKMILDYGFFGDVVSLDTTYCTNRANRPLALFSGFNHYRGTIIFGAALLYDETADSFRWLFETFLEAHGKKKPQTLFTDQDQAMAKALTKMMPETRHGLCTWHLMQNGIKHLGNLMKRGSHFLTDFKKCMYDYNQEAKFEAAWSKLVIEFNVNENNWVKSMYAIKEKWAACHMKEAFTLGMRSTQLSESLNSNFKACMRPNLNVTQFFKDFERVVEKKRYNELVCEYESRHKLAKLRYEHSPMLLNLAEVYTPIIFDVFTNEFALFLAACIRERDVSQIPFEYVITLVNEEGEWRVLFDPIQISISCSCRKFETFGILCCHALKVFEANDIKLVPNQYILKRWTRDARNGIILDTRKNEVVADPKLDSTRRYKQVCLSMIRLAAEVSTSEKLHQIVEQGIHDLWKKVKEVRLEDNIMANDEYSAPILAREDETQVKGFKERVGPRRHKRLKGWVELQSTKKRKATPSQQHMVYNFMVITIFVLPFLPIY. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00341 642 Pfam FAR1 DNA-binding domain 1 67 IPR004330 -
Seca2g00341 642 Pfam SWIM zinc finger 457 481 IPR007527 GO:0008270
Seca2g00341 642 ProSiteProfiles Zinc finger SWIM-type profile. 436 483 IPR007527 GO:0008270
Seca2g00341 642 SMART 26again6 458 485 IPR006564 GO:0008270
Seca2g00341 642 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 561 IPR031052 GO:0006355
Seca2g00341 642 Pfam MULE transposase domain 166 260 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00341 Seca-Chr2 4799501 4801528 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g00341 MULE 2.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00341 - - mtr:112420213 833.172