LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g00321	ATGGCTTCAACAAGCCCTTCTCCAAATGCTTCCCCTTCTGCAGTGCCTCCAGCATCTCCTGGTGTTGTATCACCACCTGCTTCTTCATCTTCCACCCCACCATCACCTCCCATTTCTCAACCCAATCAAACATCCAATTCCCCTGCTCCTTCATCTCCTTCTGACCCATCAGCTTCACCTCCTACTCCTCCACAGGCAGTGCCTGCAAGCCCTCCTCCTTCCCCATCCCTTTCTCCTCCACCATCATCTACACCACCACCAACCTTGCCCCCTCCTTCACCACCAGCTTCTCCACCACCATTACCACCAGCATCTCCAACACCACCTGTTGCAACATCACCCCCAACACCAGCTACCACTGCCCCTCCTCCAGCTGAGACTTCACCTTCCCTTCCAAATTTGTCCCCACCACCTCCAACAGCTGGTTCCCCTCCGCCTCAATCCTCAAAGGCACCTCCCTCTCAGCCAATTTCGCCATCTCCCCCACCTCCAGCCAATGTGCCAAAGCCACCATCCACCAATTCTCCTCCTGCACCACAGGCAAAGCCACCAAAACGTACTCCTTCACCTCCTTCACATGCATCCCCTCCATCAGTTTCTCAGTCTCCTCCTTCTCCTTCAGCTGATGTTCCCCCTCCATCTTCATTGCCATCAACTCCTCCTTCCACTGATGTTCCCCCTCCATCCTCATTGCCATCAACTCCTTCAGTTCCTTCAGGCTCTTCACCTCCAGTTTCTTTGCCCAGTCCCCCTACTAATAAAACAGCAGCTGGGGGTCCAACTGTGCCACTACCCTCTATTCCAACTGAGAAACCCACTGCTAGATCAACTAATGGTGACACTGATAATATAGCCACAAATACCACACCTTCACATTCAGGAGGGTTAAATACTGGAGGAGCTGTGGCTATTGGTGTTGTAGTTAGTTTTATTGTCCTCAGCCTTCTTGTCATGGCTGTGTGGTTTGTACAGAAAAAGAAGAAGAAGGAAACAGGACCAAGAGTTGGTTATGCTATACCTTCTCCATTTGCCTCATCTCAAAATTCAGGTAGTACCTTGTTCTTGAAGCCACAGTCTCCAGCCAACTTTATAGGTAGTGGCTCTGGTAGTGATTTCGTGTATTCACCATCAGAGCCAGGTGGAGTAAGTAGTTCAAGAGCATGGTTCACATATGAAGAACTTATCCAAGCAACAAATGGGTTTTCAGCACAAAATCTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTCATAGATGGAAGAGAAGTGGCTGTGAAACAGCTCAAAGTTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCGGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCCTTGGTGGGTTACTGTATATCTGAGCATCAAAGATTGCTTGTCTACGACTATGTTTCCAACAATACTCTTCATTACCATCTACATGGTGAAAACCAACCCGTTTTGGATTGGCCTACCAGAGTCAAGGTTGCTGCCGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTTGATCACAACTTTGAAGCTCAAGTTTCAGACTTTGGGCTTGCAAAATTAGCATTGGATACATATACACACGTAACTACACGTGTAATGGGAACCTTTGGGTATATGGCACCAGAATATGCCACAAGTGGGAAATTGACTGAAAAGTCTGATGTGTATTCCTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCAGCCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTATTGACTGAAGCACTTGATAATGAGGACTTTGACATATTGGTGGATCCAAGACTGGGAAAGAACTACAATAGAAATGAAATGTTTCGAATGATTGAGGCTGCTGCAGCCTGCGTTCGCCACTCTTCAGTTAAGAGGCCACGGATGAGTCAGGTAGTAAGAGCTTTAGATTCCTTAGATGAGTTTTCAGATCTCAATAATGGAATGAAACCTGGGCAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGCAGCCAAGATAGTTCCAGTTTCTTTAATGAGTCTCAGAGTAGTTGGAGGAGTAGAGAGCATGACTCTACAACTATCTTCCCCCAAAACAAATCTGGGTCTTGGAACGTTTGA	2250	0.4724	MASTSPSPNASPSAVPPASPGVVSPPASSSSTPPSPPISQPNQTSNSPAPSSPSDPSASPPTPPQAVPASPPPSPSLSPPPSSTPPPTLPPPSPPASPPPLPPASPTPPVATSPPTPATTAPPPAETSPSLPNLSPPPPTAGSPPPQSSKAPPSQPISPSPPPPANVPKPPSTNSPPAPQAKPPKRTPSPPSHASPPSVSQSPPSPSADVPPPSSLPSTPPSTDVPPPSSLPSTPSVPSGSSPPVSLPSPPTNKTAAGGPTVPLPSIPTEKPTARSTNGDTDNIATNTTPSHSGGLNTGGAVAIGVVVSFIVLSLLVMAVWFVQKKKKKETGPRVGYAIPSPFASSQNSGSTLFLKPQSPANFIGSGSGSDFVYSPSEPGGVSSSRAWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVSNNTLHYHLHGENQPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEAQVSDFGLAKLALDTYTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDNEDFDILVDPRLGKNYNRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFSDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSREHDSTTIFPQNKSGSWNV.	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g00321	749	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	521	533	IPR008271	GO:0004672\|GO:0006468
	Seca2g00321	749	Gene3D	Phosphorylase Kinase; domain 1	378	476	-	-
	Seca2g00321	749	MobiDBLite	consensus disorder prediction	53	250	-	-
	Seca2g00321	749	ProSiteProfiles	Protein kinase domain profile.	401	681	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00321	749	FunFam	proline-rich receptor-like protein kinase PERK8	477	689	-	-
	Seca2g00321	749	MobiDBLite	consensus disorder prediction	10	43	-	-
	Seca2g00321	749	Gene3D	Transferase(Phosphotransferase) domain 1	477	693	-	-
	Seca2g00321	749	SMART	serkin_6	401	721	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g00321	749	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	311	722	IPR047117	-
	Seca2g00321	749	PRINTS	Proline rich extensin signature	74	99	-	-
	Seca2g00321	749	PRINTS	Proline rich extensin signature	13	34	-	-
	Seca2g00321	749	PRINTS	Proline rich extensin signature	37	53	-	-
	Seca2g00321	749	PRINTS	Proline rich extensin signature	55	72	-	-
	Seca2g00321	749	Pfam	Protein tyrosine and serine/threonine kinase	404	674	IPR001245	GO:0004672\|GO:0006468
	Seca2g00321	749	ProSitePatterns	Protein kinases ATP-binding region signature.	407	429	IPR017441	GO:0005524
	Seca2g00321	749	MobiDBLite	consensus disorder prediction	270	296	-	-
	Seca2g00321	749	SUPERFAMILY	Protein kinase-like (PK-like)	379	674	IPR011009	-
	Seca2g00321	749	FunFam	Proline-rich receptor-like protein kinase PERK8	373	476	-	-
	Seca2g00321	749	MobiDBLite	consensus disorder prediction	1	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g00321	Seca-Chr2	4547399	4556026	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g00321	301	616	Trihelix Transcription Factor Family	AT1G26150	67.405	1.98e-153	459

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Seca2g00321		PK_Tyr_Ser-Thr	7.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g00321	-		-	gmx:100784873	905.975