Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00319 ATGGGAAGGAAAAAGACAGAGGATACAGGCCTATCTGCAAAGGCTAAGGCAAGTAGCAAAGATGCTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAGGTCTCTTCTTCCTCCAATAAGCCCAAGCCAAAATCTGCTCCAAAAGTTACTACATACACTGATGGTATTGATCTTCCTCCCTCTGATGATGAAGAAGATGAATATCTATTGGAGGAGCAGCAGAGGCCTGATTTGAAGCCACTTGATATGTCCATTGCAGACAAAGAGTTGAAAAAGCGTGAAAAGAAAGATCTTTTAGCTGCCCATGCTGCTGAGCAAGCAAAGAAGGATGCTCTTAAGGATGATCATGATGCTTTCACTGTTGTCACTGGGAGCCGGTCTTCAGTGCTTGATGGAGATGATGATGCTGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGGGGGAAAGAACTTCTGAAGAATACATCAGTGAGGATATCTCATGGGAAGCGGTATGGTCTGGTTGGTCCCAATGGAATGGGAAAATCAACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAAAATATTGATGTCCTTCTGGTTGAACAGGAGGTTGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGATGAACTTGTTAAAATTCGACAAGAAGTTTCTGCTCTACAGAATATATCTTCTGTTGAAGAAAGTGTAGATAAAGATAATAACTATGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTGTATGAAAAATTACAGCTGATGGGGTCTGATGCTGCTGAAGCTCAGGCATCAAAGATTTTAGCTGGTTTAGGTTTTACAAAAGATATGCAGGGCCGTCCTACTAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTCTTATTGCTTGATGAACCTACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGGTGGAAGAAAACTTTGGTGGTTGTCTCACATGACAGGGATTTCCTCAATACAGTATGCACTGAGATTATTCATCTGCATGATTTGAAACTTCATTTCTATCGGGGAAACTTTGATGATTTTGAGAGTGGGTATGAACAGCGTCGTAAGGAGATGAATAAAAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGAAGTGGAAACCGGGCTCAGCAAGAAAAGGTGAAAGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAAGGTAAGGGCAAGGTTGATGAGGACGAGGCGCCACCAGAGGTACCACAGAAGTGGAGGGACTACAGTGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGGGAGGATTTTAGACTTTCAAATGTTGATGTTGGAATTGATATGGGGACTCGCGTTGCTATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTCCTGGCTGGTGATCTGGTTCCAACTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTACTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTTCACCCAGAGCAGGAGGGACTTAGCAAGCAGGAGGCTGTTCGTGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTACCCCTATTGTCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTGTTCACGTCTATATCCATGTCAAAACCACACATTTTATTGTTAGATGAACCAACAAATCATTTGGATATGCAAAGTATTGATGCATTGGCTGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCATGATTCTAGATTGATATCACGTGTTTGTGAGGATGAAGAAAGGAGTCAAATATGGGTTGTTGAGGATGGTACTGTCAGAACTTTCCCTGGAACATTTGAGGACTACAAGGAGGATCTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTAA 2151 0.4254 MGRKKTEDTGLSAKAKASSKDASKKEKFSVSAMLASMDEKPDKPKKVSSSSNKPKPKSAPKVTTYTDGIDLPPSDDEEDEYLLEEQQRPDLKPLDMSIADKELKKREKKDLLAAHAAEQAKKDALKDDHDAFTVVTGSRSSVLDGDDDADANVKDITIENFSVSARGKELLKNTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVSALQNISSVEESVDKDNNYEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPEQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTFPGTFEDYKEDLLREIKAEVDD. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00319 716 Gene3D - 455 715 IPR027417 -
Seca2g00319 716 Gene3D - 153 439 IPR027417 -
Seca2g00319 716 MobiDBLite consensus disorder prediction 423 464 - -
Seca2g00319 716 MobiDBLite consensus disorder prediction 1 93 - -
Seca2g00319 716 ProSitePatterns ABC transporters family signature. 314 328 IPR017871 GO:0005524|GO:0016887
Seca2g00319 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 489 714 IPR003439 GO:0005524
Seca2g00319 716 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 109 709 - -
Seca2g00319 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 702 IPR027417 -
Seca2g00319 716 Coils Coil 406 426 - -
Seca2g00319 716 CDD ABCF_EF-3 489 691 - -
Seca2g00319 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 417 IPR003439 GO:0005524
Seca2g00319 716 Pfam ABC transporter 171 342 IPR003439 GO:0005524
Seca2g00319 716 FunFam ABC transporter F family member 4 154 438 - -
Seca2g00319 716 Pfam ABC transporter 506 641 IPR003439 GO:0005524
Seca2g00319 716 Coils Coil 232 252 - -
Seca2g00319 716 FunFam ABC transporter F family member 4 454 716 - -
Seca2g00319 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 412 IPR027417 -
Seca2g00319 716 CDD ABCF_EF-3 156 387 - -
Seca2g00319 716 SMART AAA_5 180 386 IPR003593 GO:0016887
Seca2g00319 716 SMART AAA_5 515 691 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00319 Seca-Chr2 4520864 4523053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00319 489 692 Calmodulin-binding Proteins AT2G36910 28.251 4.04e-11 64.7