Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00316 ATGTTCCCTTCAACTAATTACACCTCCTCAAGCCCTTACCCTTGTTTCCCTTCTTCTTCTTCTTCATCTTCATTATACCCTCCTTTCACTTTCCTTAACCTTGAAAATGCTTCTGCAAACAACACTTTTCATCATATCCATGATCCAGTACTTTCTGTTCCTTACATCCCCACCACTCCTCATCCTCATCATCATCATCATCATCATGCTGCAATCCCTGAAACACTCACCAATTGGGCAGTTTCTGACTGTTCAGCTTCAATGCTCAAACAAGATCTAAGTGTTTCTCACTATGGAATCTCCAATTTTCTCACAAAGAAACCAGCAAAGAAGGCAGTGAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGGGACAGAAGGGTGAGATTGTCCATTGATATTGCAAGAAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCAAGCAACACCCTTGATTGGCTCTTCACAAAGTCAAAGAAAGCAATTGAAGAGCTAACTAGAAGCAAGAGTACTAGTAATAATGATGATGATGATGATACCTTATCATCTTCTGAGGGTGAAGTGGTTTCTCTCATCAACAACCAACAAAAGGCGGATCCCAACAAAGAGAAGAAGTTGAAAAGGGCAAAGATGAAGGAACCAAAGGGAAAAGAAAGGGCAAGGATTGTGGAGGAGGAGGAGGAGCAAGAAAGGTACCCTGAAAATCCTCAAACCCTTCACCAATTGATGAGGTCATCACCTTTTCATTCTCAACTTGTGGGTAGTGAATTGCCAAGAGATGATGAAGATGATGATGATGAGTTCAATGTTATTGAGGAATCTATAGTGATCAAGAGAAAGAAGGTGAAGCAATCTTCTCATCATCACCAAAACATTGTGATCCCTAAGGAAACAAGTTTTAACAACAGTGACTCTAATAACTCCTTCCCCATGTCTCCAAATTGGGATGCTAATGGACGCTCCAATTTTTGTGCAATAGCCACCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAATCTTGGGAGGAGTGCACCAGTCCTCACCTATACTAA 1077 0.4104 MFPSTNYTSSSPYPCFPSSSSSSSLYPPFTFLNLENASANNTFHHIHDPVLSVPYIPTTPHPHHHHHHHAAIPETLTNWAVSDCSASMLKQDLSVSHYGISNFLTKKPAKKAVKKDRHSKIHTSQGLRDRRVRLSIDIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIEELTRSKSTSNNDDDDDTLSSSEGEVVSLINNQQKADPNKEKKLKRAKMKEPKGKERARIVEEEEEQERYPENPQTLHQLMRSSPFHSQLVGSELPRDDEDDDDEFNVIEESIVIKRKKVKQSSHHHQNIVIPKETSFNNSDSNNSFPMSPNWDANGRSNFCAIATMNLSTGLQIFGKSWEECTSPHLY. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00316 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 63 330 IPR005333 GO:0003700
Seca2g00316 358 Pfam TCP family transcription factor 113 231 IPR017887 -
Seca2g00316 358 MobiDBLite consensus disorder prediction 198 243 - -
Seca2g00316 358 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Seca2g00316 358 MobiDBLite consensus disorder prediction 205 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00316 Seca-Chr2 4455249 4456899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00316 61 263 TCP Transcription Factor Family AT1G67260 37.288 7.09e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca2g00316 TCP 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00316 - - gmx:100786452 330.487