Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00309 ATGAACATAAGATCATTTTCACACATACTAAAAGTGGATCCAAGAAGGCATGGAAAGCTGCCCCTATCTTCACAAGCACCAGAGGCTAAAGAAGAGAAAGAAGACACAGTAGATGATAAGTTTGATGCTTATGCATCTTCTTGGTGTGCTCCAGACAGTGACATGTCTGCCATGGTTTCAGCTCTAACTCAAGTTATGGGAACAACCAATCGGAACCCACATATGGCACAATCAACCTCTTTTCCTGAAGATCCTCACCCACACCCATCTCAACCTCTTCTAGATCAAGGTACTAAAGAGGTGAGAAAGAAAACACACTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTCGTGATCCAAAGAAAGCAGCGAGAGTGTGGCTTGGAACCTTTGACACAGCTGAGGATGCAGCCATTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACTAAAGCTAAGCTTAATTTCCCTCAAAGAGTTCAACTTCAAGCTCAAGGGAACACTACTAATCTTGTTGGTTATGACTCTGCTGCTGCAAACAGAACCGTTTTTCCTTCCCATGCCACTAGTGCTAGTAATGATAGTGCCATTCAACAAAGTTCTGTTGCCCTTCCACCTCCATCATTCTCCACACAACAACAACAACAAGCTTTCCCAGATCTGTTTCAATATGCACAGATTCTTTCAAGTGATGATGCACAATTCCCTTATTACACATCCAATCTTTTCAATCAACAACAACCTTTCACTTCACAATCTTCTTCTTCTTCCTCACCCAATAACTTCTACAACCACCAACAACATGATGAAGAAGAAGGACATCATCGATACCCAGACCAGTAA 861 0.4262 MNIRSFSHILKVDPRRHGKLPLSSQAPEAKEEKEDTVDDKFDAYASSWCAPDSDMSAMVSALTQVMGTTNRNPHMAQSTSFPEDPHPHPSQPLLDQGTKEVRKKTHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDKAALKFKGTKAKLNFPQRVQLQAQGNTTNLVGYDSAAANRTVFPSHATSASNDSAIQQSSVALPPPSFSTQQQQQAFPDLFQYAQILSSDDAQFPYYTSNLFNQQQPFTSQSSSSSSPNNFYNHQQHDEEEGHHRYPDQ. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00309 286 MobiDBLite consensus disorder prediction 1 37 - -
Seca2g00309 286 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Seca2g00309 286 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Seca2g00309 286 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Seca2g00309 286 Pfam AP2 domain 105 155 IPR001471 GO:0003700|GO:0006355
Seca2g00309 286 MobiDBLite consensus disorder prediction 271 286 - -
Seca2g00309 286 MobiDBLite consensus disorder prediction 252 270 - -
Seca2g00309 286 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Seca2g00309 286 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Seca2g00309 286 MobiDBLite consensus disorder prediction 194 218 - -
Seca2g00309 286 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
Seca2g00309 286 Gene3D AP2/ERF domain 105 166 IPR036955 GO:0003700|GO:0006355
Seca2g00309 286 PANTHER DNA-BINDING DOMAIN 64 250 IPR044808 GO:0003700|GO:0009873
Seca2g00309 286 MobiDBLite consensus disorder prediction 69 98 - -
Seca2g00309 286 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Seca2g00309 286 MobiDBLite consensus disorder prediction 252 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00309 Seca-Chr2 4322932 4327862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00309 54 168 AP2-EREBP Transcription Factor Family AT5G61890 62.602 8.55e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca2g00309 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00309 - - gmx:100796624 280.411