Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00304 ATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTATTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCGAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGAGAGAGTAGGTGGGCTTCAAATGGTTCAAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCGTCAAATTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGAGGAATGTTGTATTACTACCGTAAACAGTGTAGCAAATCATCTGGGTCTAGTAGCCAACATTCTGGTCAGCGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAGGTCGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCGCCAACAAAGAACTATACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCCGAAAGGTTGTTACCTGCCAGTCCAATGGGAAGTGGTGATAATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACTACTATTGAAGAATTTGCAGCTGATAGAAGTCTTGCTTCTGCGCATCTGGAGCGCCCCTCAAGAAGTTTGCACCAGCAACGATCCTGTATTAAAAATGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCTCTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTGAGGTCTCTGACATTGGATGTTAAAGTGTGGGAGCCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACCTTTGCCAACTCAGTATGGGAGGAACTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCTCCACAGGCTTAAGCAAGTCCGATAAACAACTGATGCTTTTCATCACCAAACCTTGTCAATCTGATTCTCTCTCTGTCAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAACCAAAGGACAGTCAATACCGTCTCCTGGTGGCACAACAGATTTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTCTACCGCTACATTGTTAATTCTGACATTGATGTTAATCTTGTTTATGAGCAAATGTGTAGCAACTCTTTAACTCTTGCCAAAGTAATGTTATTACAAGAGCAGACAAGCCATGATCACAGCTCTACTTTAGCAGGGAACACATTGGACTGGTCCTCTAATAGCTCTTTGAATTCGGTGGGTACAAAAGACGGCCAGGCTATGGATTATCTAGATGGGTGCACACTACTTCACCTCGCTTGTGAAACTGCGGATATTGGCATGCTGGAGCTCCTCCTACAATATGGTGCAAATATTAATGCAACTGATTTGAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGCAAATCTACATTTGCGAGATTACTGCTTTCAAGGGGAGCTGATCCTCAAGCTGTGGATGAGCAAGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGACAGAGAAGTCCATGCTTCATTGACTGATTCTAATGGATGA 1911 0.4286 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGDNRSTSESSSFESSDFDHTTIEEFAADRSLASAHLERPSRSLHQQRSCIKNEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVSTGLSKSDKQLMLFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKAVYRYIVNSDIDVNLVYEQMCSNSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSSNSSLNSVGTKDGQAMDYLDGCTLLHLACETADIGMLELLLQYGANINATDLRGQTPLHRCILKGKSTFARLLLSRGADPQAVDEQGRTPIELAAESNADDREVHASLTDSNG. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00304 636 SUPERFAMILY ArfGap/RecO-like zinc finger 305 446 IPR037278 -
Seca2g00304 636 PANTHER CENTAURIN/ARF 1 633 IPR045258 GO:0005096
Seca2g00304 636 Gene3D - 451 628 IPR036770 -
Seca2g00304 636 ProSiteProfiles Ankyrin repeat region circular profile. 543 574 - -
Seca2g00304 636 MobiDBLite consensus disorder prediction 245 269 - -
Seca2g00304 636 ProSiteProfiles Ankyrin repeat profile. 543 575 IPR002110 GO:0005515
Seca2g00304 636 Pfam Ankyrin repeats (many copies) 563 617 IPR002110 GO:0005515
Seca2g00304 636 MobiDBLite consensus disorder prediction 616 636 - -
Seca2g00304 636 SMART PH_update 99 236 IPR001849 -
Seca2g00304 636 MobiDBLite consensus disorder prediction 252 269 - -
Seca2g00304 636 CDD PH_ACAP 101 238 - -
Seca2g00304 636 ProSiteProfiles ARF GTPase-activating proteins domain profile. 306 451 IPR001164 GO:0005096
Seca2g00304 636 MobiDBLite consensus disorder prediction 56 75 - -
Seca2g00304 636 SUPERFAMILY PH domain-like 99 249 - -
Seca2g00304 636 ProSiteProfiles PH domain profile. 98 234 IPR001849 -
Seca2g00304 636 Gene3D Arf GTPase activating protein 287 450 IPR038508 -
Seca2g00304 636 Pfam Putative GTPase activating protein for Arf 309 446 IPR001164 GO:0005096
Seca2g00304 636 Pfam PH domain 100 233 IPR001849 -
Seca2g00304 636 Coils Coil 33 53 - -
Seca2g00304 636 SMART arf_gap_3 306 451 IPR001164 GO:0005096
Seca2g00304 636 ProSiteProfiles Ankyrin repeat region circular profile. 576 608 - -
Seca2g00304 636 Gene3D - 91 243 IPR011993 -
Seca2g00304 636 CDD ArfGap 309 438 - -
Seca2g00304 636 PRINTS HIV Rev interacting protein signature 360 381 IPR001164 GO:0005096
Seca2g00304 636 PRINTS HIV Rev interacting protein signature 337 354 IPR001164 GO:0005096
Seca2g00304 636 PRINTS HIV Rev interacting protein signature 318 337 IPR001164 GO:0005096
Seca2g00304 636 MobiDBLite consensus disorder prediction 59 75 - -
Seca2g00304 636 SMART ANK_2a 576 605 IPR002110 GO:0005515
Seca2g00304 636 SMART ANK_2a 543 572 IPR002110 GO:0005515
Seca2g00304 636 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 288 452 - -
Seca2g00304 636 Gene3D Arfaptin homology (AH) domain/BAR domain 1 57 IPR027267 -
Seca2g00304 636 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515
Seca2g00304 636 SUPERFAMILY BAR/IMD domain-like 1 121 IPR027267 -
Seca2g00304 636 SUPERFAMILY Ankyrin repeat 472 622 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00304 Seca-Chr2 4260348 4271643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00304 318 445 C2H2 Transcription Factor Family AT4G21160 38.760 4.03e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00304 K12489 - gmx:100789134 1124.38