Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00293 ATGGACTTATTGGTTTTATTTATTCAGGTGATTGAATACACTGGTGAACTTGTTAGGCCTCCCATAGCTGACCGGAGAGAGCACTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTAGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCTCCAAATTGCTATTCAAGAGTTATAAGTGTTAATGGTGATGAGCATATTATAATATTTGCGAAGAGGGACATCAAACAATGGGAGGAACTTACATATGACTATAGATTTTTCTCAATTGATGAACGGCTGGCTTGTTACTGTGGCTTCCCAAAATGCCGAGGCATAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACCCTATATGCACCAAGAAGTGAATTAATAGATTGGAGAGGAGAATGA 447 0.387 MDLLVLFIQVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00293 148 Gene3D SET domain 9 137 IPR046341 -
Seca2g00293 148 SUPERFAMILY SET domain 10 121 IPR046341 -
Seca2g00293 148 ProSiteProfiles Post-SET domain profile. 108 124 IPR003616 -
Seca2g00293 148 SMART set_7 1 108 IPR001214 GO:0005515
Seca2g00293 148 ProSiteProfiles SET domain profile. 1 102 IPR001214 GO:0005515
Seca2g00293 148 Pfam SET domain 42 101 IPR001214 GO:0005515
Seca2g00293 148 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 9 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00293 Seca-Chr2 4138247 4141173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00293 10 124 C2H2 Transcription Factor Family AT2G23740 30.882 2.62e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g00293 SET 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00293 - - gmx:100808923 291.967