Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00292 ATGGCATTCCCAGAAGGTGGTGCCGAAGAAGACACCAACATCGATGTTCACACCACACGTGGCACCCCCATTCGGTATCTTCCCCTCGATCACCTCTACTCCGCCACGTCACCTTGCAGTGGCTCCGCTAATGTCATGTCCAAGAAGGTGAAAGCTCGCAAGTTCAGCCTCAACAACAACAACGGTGACAGTGACCCGCCGCTCGATCATCATCACGGCAGTAAGAAAACGACGTCGTCTTTGCCGGTGCTTCCCCCTCCTAAGCCCCCTCTTCTACATGTCTACTCTCGCCGACGCAAGAGGCGTTCCTCCCCGACGTCGTCGTTTTACCATTCGGGCCGAGTCAGGGAGAATGGGGACTCCGAGAAGAGGGTTCTGAAGAAGAGGAAAACTGGGAGCACCGAGTTGGAGAAATTGGGCGTGGATTTGAACGCGGTGGGGAACCTAGATGGGCCTCGATTGAGGGAATGTCGCACTCAAATTGGGAATTCTGGCATTGCTGGCAACAACAACGCCAAGTTTGGTGGTGGTTCCCTGGAGAATTTCCCCAAGTTGCTGCCGGAATCTCGCACTGTGAAGAGATGGGTCATGTTGAATTTTGAGAATGCTGATCCCGAGGCATTCATTGGATTACGATGCAAGGTTCATTGGCCCATGGATTTAAGATCGTACACCGGTTACGTCAACGGTTATGATGTGGAAACTAAGATACATCATATCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAAGTTTCATGTTTCCCGTGATGAGATGAAACATTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAACGTCTCTGATTATGACATTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGCCAAGACTTTGAGGCAGGGGATATCATATGGGCTAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTCGATGAATCATTTGCTAGCAGCTGTAAGGGTTTAAAAACATTTATAGGAGGAAGATCAGTTCCTGTCCAATTTTTCGGGACCCATGACTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTGCACTCAAAGTGCAAGAAACTTAGTTTTTTTGAAGGTTTAGAAGAGGCAAAAAGGTATTTAAGTGAACAGAAGCTTCCTTTGGAGATGCTAGAATTGCAGAAGAGATGTACAGCCGATGACAGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCAGGTGAAGATTGTTTAAATGACAACGGAGTTTGGGTGGCACCTGAAAACATTGAAACTTTTCCTTATGAAGTAGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATCTTTTGGGGATGGAAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCTGTTACTGACCCTAAAGTATCTGTGCCTTATAAGATGGAGGTTTTGAGAGATCCAGAATCCAAAGTCCGGCCTCTATTTAGATTGACAGTTGATGGTGGTGAGCAGTTCAATGGCTATACACCATCTATTTGCTGGAATCAAGTATACAAAAGGATAAAGAAAATGGAAAAGGATGTTTCTGAAGGTTCTGTTGCTGAAGGTGGGGTAGAAAGGGGCTACGAATCTGGTTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGGCTAAATTGATACGGGGATTATCTAAACGCCAAGTCTCTTTGAAGAACTCAATTTCCAAGTTAGGTTCTAGAAGACATAATGACTTGCCTCTTGGTTATAGGCAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTTCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGCGGAGCAATGAAGCCTACGACAGATGGCAGATGGGCACATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAATAGAATTAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTGGCATACCATCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAACGAGGACAGGCTTTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTCATGAACATTCTGTTGCTGATGAACGTATTGTGCGAGTTGCTGGTCAGTGTTCAGATTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTAGAGAATCAATCTTACTTAGTAGGTGGATACTGCCAACATGGATTGTTAAACAACCCAGAGCCTTCTGGCAGAGGAGTGTGCTCTAAATTCTTTTGTAGCCAGCAAAGGCTGAGGACCTCTCTGATAGACTCTTCAGACAGCATACTTTCTATTGCCGAAAAATACAAGTACATGAGGGAAACCTTTCGGAAACGACTAGCATTTGGTAGGAATAATTGTCTTTAA 2796 0.446 MAFPEGGAEEDTNIDVHTTRGTPIRYLPLDHLYSATSPCSGSANVMSKKVKARKFSLNNNNGDSDPPLDHHHGSKKTTSSLPVLPPPKPPLLHVYSRRRKRRSSPTSSFYHSGRVRENGDSEKRVLKKRKTGSTELEKLGVDLNAVGNLDGPRLRECRTQIGNSGIAGNNNAKFGGGSLENFPKLLPESRTVKRWVMLNFENADPEAFIGLRCKVHWPMDLRSYTGYVNGYDVETKIHHIKYDDGDEENLILSNENIKFHVSRDEMKHLKLSYAKVRDSNVSDYDIEEMLALAASLDDCQDFEAGDIIWAKLTGHAMWPAVVLDESFASSCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKLSFFEGLEEAKRYLSEQKLPLEMLELQKRCTADDSNNVSGEDGGCTDSGEDCLNDNGVWVAPENIETFPYEVGDLQILSLGKIVEDSASFGDGRSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESKVRPLFRLTVDGGEQFNGYTPSICWNQVYKRIKKMEKDVSEGSVAEGGVERGYESGSDMFGFSNPKVAKLIRGLSKRQVSLKNSISKLGSRRHNDLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLNRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQSYLVGGYCQHGLLNNPEPSGRGVCSKFFCSQQRLRTSLIDSSDSILSIAEKYKYMRETFRKRLAFGRNNCL. 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00292 931 Pfam PWWP domain 305 392 IPR000313 -
Seca2g00292 931 Pfam F/Y-rich N-terminus 451 501 IPR003888 GO:0005634
Seca2g00292 931 CDD PWWP_AtATX1-like 305 398 - -
Seca2g00292 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 797 IPR013083 -
Seca2g00292 931 CDD PHD_ATX1_2_like 619 665 IPR042010 -
Seca2g00292 931 SMART PHD_3 729 795 IPR001965 -
Seca2g00292 931 SMART PHD_3 619 666 IPR001965 -
Seca2g00292 931 SUPERFAMILY Tudor/PWWP/MBT 298 399 - -
Seca2g00292 931 ProSiteProfiles PWWP domain profile. 304 367 IPR000313 -
Seca2g00292 931 SMART fyrc_3 512 596 IPR003889 GO:0005634
Seca2g00292 931 Pfam PHD-finger 632 666 - -
Seca2g00292 931 MobiDBLite consensus disorder prediction 115 129 - -
Seca2g00292 931 Gene3D - 208 259 - -
Seca2g00292 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 665 IPR013083 -
Seca2g00292 931 MobiDBLite consensus disorder prediction 56 129 - -
Seca2g00292 931 CDD ePHD_ATX1_2_like 680 794 IPR041956 -
Seca2g00292 931 SMART PWWP_4 302 365 IPR000313 -
Seca2g00292 931 Gene3D - 292 403 - -
Seca2g00292 931 SUPERFAMILY FYVE/PHD zinc finger 611 681 IPR011011 -
Seca2g00292 931 PANTHER PHD FINGER PROTEINS 49 929 - -
Seca2g00292 931 SMART fyrn_3 460 504 IPR003888 GO:0005634
Seca2g00292 931 CDD Tudor_Agenet_AtEML-like 209 259 - -
Seca2g00292 931 FunFam Histone-lysine N-methyltransferase 669 797 - -
Seca2g00292 931 ProSitePatterns Zinc finger PHD-type signature. 620 665 IPR019786 -
Seca2g00292 931 ProSiteProfiles FYR domain FYRN motif profile. 445 504 IPR003888 GO:0005634
Seca2g00292 931 ProSiteProfiles FYR domain FYRC motif profile. 508 594 IPR003889 GO:0005634
Seca2g00292 931 Pfam F/Y rich C-terminus 510 582 IPR003889 GO:0005634
Seca2g00292 931 ProSiteProfiles Extended PHD (ePHD) domain profile. 671 795 IPR034732 -
Seca2g00292 931 Pfam PHD-zinc-finger like domain 673 794 - -
Seca2g00292 931 SUPERFAMILY FYVE/PHD zinc finger 720 759 IPR011011 -
Seca2g00292 931 Gene3D - 446 586 - -
Seca2g00292 931 ProSiteProfiles Zinc finger PHD-type profile. 617 668 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00292 Seca-Chr2 4127889 4137983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00292 589 765 C2H2 Transcription Factor Family AT3G14740 38.462 4.00e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca2g00292 zf-HC5HC2H_2 3.7e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00292 - - gmx:100806736 1560.04