Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00289 ATGACTCAGGCAGTGGAGGTGCTGAATCGGTATGGAACGGATCTGGTAGGTGAAGCTAGGGGTTCAGATTCGGAGTGTTTGGCGGGTTTTGAGTGTTTCCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTAGTGGTGGTTCCCCTCCTCTTCTCCCTTATTCGCCTGATTCCAATTTGGACGGTGGGAAGAAGAGGAGGTTGAGGGGTTCAACTTCCTTTGATTATAAAGTGCCTGGGAGGATGTTCTTGAATGGGTCAAGCGAGGTTGCGTCCATGTACTGCAAGCAGGGTAGAAAAGGGATCAACCAAGATGCCATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAGGACACTATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAAGAAAGTTAGGGATTCTTTCCCTCTAAAGCTTAATGCACAATGGGATTTGCATCATAAGAATAAAGATGGACTCAGTGTCAGTGATGACAACAGTGCTGCTGGAAGTTATAATTCCGAAGGGCAATTTAAACTGGTTGATGAGAAACCTACTCCTGTTGATCATGAGCTTGATGGAACAAATACTATTTTGACACTAAGAGAATCCTTTTTGAAGGCTTGTAAAATTATGGACAAAGAACTAAAACTGCATCCCGATATTGATTGCTTTTGCAGTGGAACTACAGCAGTTACCTTGGTCAAGCAGGGGCTGAATCTTGTTATTGGAAATGTGGGGGATTCAAGAGCTGTATTGGGTACCCGAGATCATGATGATTCTCTTATTGCAGTTCAGTTGACCATTGACCTTAAGCCAAATATTCCAAGGGAAGAAGAGAGGATCAGGCTTCGTAAAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAGGTGGCTCGAGTTTGGCTACCTAACTCTGATTTCCCAGGTCTAGCTATGGCACGGGCTTTTGGTGATTTTTGCCTGAAGGACTTTGGGTTGATTGCTGTTCCAGATGTCTCATATCACCGCCTTACTGAGAAGGATGAATTTGTTGTTTTAGCAACAGATGGGGTAAGGCCCTCAGGGGATTTCTTTATGATAACATATTTGTTGAAATTGATTTATTTCAAGATCATATTTGCAGCCAATTCTAGACTGCAAATTGACTCTAAATGGTATTCTTACTGCTGCTTGCATTACCTTAAAAAACAATCATGTTCGTTCTTTCCCTCTTCAGGACTAGAATTTGTAGAATTTTTGGGATTTGGGAAAGGCTTGCCTCTTAAATCAATTTGGGATGTTTTATCAAACGAAGAAGTTGTGGACATTGTGGCATCTGCTCCACGATCTACTGCTGCTCGAAAATTGGTTGAGTCGGCTGTTCAAGCATGGAGGACAAAATTCCCTTTTTGTAAGGTTGATGATTGTGCCGCAGTTTGCCTCTTCTTTGATTCAAATTCCGACTTAAAGTCCGCATGTAGCACAGACAAGTTGACATCAGAGGCATCAACTGACCAATATGAGCAGTCATCTCTACTTGGTGAGAAGGGAAATGAAGTGGAAGCTGGAAAGCACCAGCAATAG 1590 0.4321 MTQAVEVLNRYGTDLVGEARGSDSECLAGFECFLNIVRALGMGSCISEVGASGGSPPLLPYSPDSNLDGGKKRRLRGSTSFDYKVPGRMFLNGSSEVASMYCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKNKDGLSVSDDNSAAGSYNSEGQFKLVDEKPTPVDHELDGTNTILTLRESFLKACKIMDKELKLHPDIDCFCSGTTAVTLVKQGLNLVIGNVGDSRAVLGTRDHDDSLIAVQLTIDLKPNIPREEERIRLRKGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDVSYHRLTEKDEFVVLATDGVRPSGDFFMITYLLKLIYFKIIFAANSRLQIDSKWYSYCCLHYLKKQSCSFFPSSGLEFVEFLGFGKGLPLKSIWDVLSNEEVVDIVASAPRSTAARKLVESAVQAWRTKFPFCKVDDCAAVCLFFDSNSDLKSACSTDKLTSEASTDQYEQSSLLGEKGNEVEAGKHQQ. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00289 529 Pfam Protein phosphatase 2C 204 360 IPR001932 -
Seca2g00289 529 MobiDBLite consensus disorder prediction 498 529 - -
Seca2g00289 529 Gene3D - 92 362 IPR036457 -
Seca2g00289 529 Gene3D - 423 486 IPR036457 -
Seca2g00289 529 MobiDBLite consensus disorder prediction 498 515 - -
Seca2g00289 529 SMART PP2C_4 91 483 IPR001932 -
Seca2g00289 529 ProSiteProfiles PPM-type phosphatase domain profile. 97 485 IPR001932 -
Seca2g00289 529 SUPERFAMILY PP2C-like 433 487 IPR036457 -
Seca2g00289 529 PANTHER PROTEIN PHOSPHATASE 95 483 IPR015655 GO:0004722|GO:0006470
Seca2g00289 529 CDD PP2Cc 97 485 IPR001932 -
Seca2g00289 529 SUPERFAMILY PP2C-like 92 360 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00289 Seca-Chr2 4078838 4083112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00289 428 500 PP2C-type Phosphatase Gene Family AT3G02750 59.211 2.09e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00289 - - gmx:100810538 664.455