Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00281 ATGGATGGAGTTGTGGCCATTGGGGCTCTATTTATGGAAACCTCTTTGGAGAGGAAAGGAGGGGGTTTGTTGGTTATGGTGAGTTTATGGCGTGTGATCAGAGTAGTGGAGAGTGTCTTTGAGTTAAGTGATGAGGCCATTGAAGCTCAAATTGCTGGGATAGTTTGCCAGTTTGAGGCACTCAAAGAAGAGAACATGAGGCTCTTAGAAATGATGCATGAAAAGGACAAGACAATTGAAAAGCTCAAGGAGGATTTAGATAAGTGTAGGACGCATAGCTTTATCGGTGACTCGTTTTCTGCAGCTCCGGCTAGGTCTTTTCTCCAAGTGGCCGCAACGGAGGAGGCTGCACCCCCTCTTAGGGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACCGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGACGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCTACATTGCTTGGTTCCTTTCAGACTGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGGAGCAATAATTTTACTGGGGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTCATCAGTGCTTTTATGACAGAGCTTGAACCTGACAGCCCAGTCACCCAGTGTGATTATGATCGTCTGCAATTGTCGACCAGTTCATTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGTAGCTTGTCTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGTCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAAGATCCTTCAAACCCCATTTTTAAGCCACTCCCTGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGCGTTTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA 1308 0.4434 MDGVVAIGALFMETSLERKGGGLLVMVSLWRVIRVVESVFELSDEAIEAQIAGIVCQFEALKEENMRLLEMMHEKDKTIEKLKEDLDKCRTHSFIGDSFSAAPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDSPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00281 435 Coils Coil 65 85 - -
Seca2g00281 435 Gene3D Cytidine Deaminase, domain 2 36 311 - -
Seca2g00281 435 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 121 224 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca2g00281 435 Pfam C-terminal region of eIF3h 242 434 IPR045810 -
Seca2g00281 435 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 118 435 IPR027524 GO:0003743|GO:0005737|GO:0005852
Seca2g00281 435 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 114 419 - -
Seca2g00281 435 FunFam Eukaryotic translation initiation factor 3 subunit H 102 311 - -
Seca2g00281 435 CDD MPN_eIF3h 121 384 IPR027524 GO:0003743|GO:0005737|GO:0005852
Seca2g00281 435 SMART pad1_6 122 255 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca2g00281 435 MobiDBLite consensus disorder prediction 366 380 - -
Seca2g00281 435 MobiDBLite consensus disorder prediction 362 392 - -
Seca2g00281 435 ProSiteProfiles MPN domain profile. 123 256 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00281 Seca-Chr2 4010510 4018610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00281 186 435 Eukaryotic Initiation Factors Gene Family AT1G10840 84.400 5.24e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00281 K03247 - gmx:100795273 641.728