Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00241 ATGGTGGGCAACGATGATGCTCGCCACCTTTCCGCCTCCCGGAAAATGTTCTGGCGGTCAGCTTCATGGTCCTCTGCTCGCTCCGCCGCCGCCGGAAATCCTTCCGGAGAGTCGGAGAAGGATTTTTCTGATCCCAATTCCGCTGCGGAGAACGCGAATTGGAGGTTCCCTCCACCGCCATTGACACCACGATCGCAGCAAAATTGCAAGGCACGGTCTTGCTTGCCGCCGTTGCAGCCGCTTTCCATCGGTCGCCGGAGCTTGGATGAGTGGCCCAAGGCGAGCTCTGATGACATAGGGGAGTGGCCGCAGCCCCCTACTACCCCTGGTGGGAGAGGTAACAACAACAATAACAGTAGTAATAGCAATAACAATGGTGAAAGATTGAAACTAGATTTGTCTTCAATTCAGCAGAACAACCCTGAACACAGAAATAACGGTGGGCTTGTGAAGAGGGATAAGATTGCTTTTTTTGATAAAGAATGTTCAAAAGTTGCTGATCATGTGTATCTTGGTGGTGATGCTGTTGCTAGGGATAGAGATATTTTGAAAAAGAATGGGATCACCCATGTTTTGAACTGTGTGGGCTTTGTGTGTCCTGAGTATTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGTTGCAGGATAGTCCTTCGGAGGATATAACTAGTATTCTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAACAGAATGGGAGGGTGTTTGTCCACTGTTGTCAAGGGGTGTCCAGGTCCACTTCTCTGGTGATTGCTTACCTCATGTGGAGGGAAGGGCAGAGTTTTGAGGATGCTTTTCAGTTTGTGAAGGCTGCAAGAGGTATTGCTGATCCAAACATGGGTTTTGCTTGTCAGTTGTTACAGTGCCAGAAAAGGGTCCATGCATTCCCTCTTAGCCCGAGTTCTTTGCTGAGAATGTATAGAATTGCTCCCCACTCACCATATGATCCTTTGCATCTTGTCCCTAAAATGTTGACAGATCCATCTCCATCTGCGTTGGACTCCAGGGGTGCATTTATAGTACACATTCCTTCTGCAATATATGTTTGGATTGGTAAGAATTGTGAAGCCATCATGGAAAGGGATGCCAGAGGGGCTGTAGGTCAGATTGTCCGCTATGAGAGAGTGCAAGGGCCTATTATAATGATTAAGGAAGGTGAGGAACTGGCTTCCTTCTGGGATGCTTTTTCAAAATTTTTGCCTTTGATGGACACATCTGGTAATAAAATAGAAAGTAGCAGATCAAGTATTAAAATTTTGCCTGGTGAGAGGAAAGTGGACTCATATGATGTTGATTTTGAAGTTTTCCAAAAAGCAATCACTGGAGGTTTTGTGCCTCCATTTGCATCATCAGAGGATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAATTGGAGCGTTTTAAGGCGAAATAAAGTTACCTCTGCTAACATGAAAGAGTTTGTCTCAGCCCCTAAGTTATCCTTTCCACGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAATTCATCTCCATCTTCGTCAGTGTCATCATCACCATCTTTATCATCTTCCTCTTCACCCTCTTATGTCTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCAAAGTTTTTGTCAGAATTGTCCCCAGATTCTTCCTCTCTAGTTTTGAGTTCTATTGCAGTATCTCCACCTTTGTCTAACTTTACTAATTTGTCTCTCTCATCAAATTCTTCTTCTCAACCAGTGTCTAACAGTACAGATGTCCGCAGTGTCAAGTTACCACATCCATGTTCTCAGTCAGCCTCTTTACCATTGAAAAAACCACCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAGTCTTTGAAGTTGCCACTAATGAATGAAAAGACACAAGTAATAGATAAACCATCAACTTTTCATGGTAGTCGAGAATATGGTGCTATTCTTAATGGCAACATTAGCTATTTGCAACAATCAGATAGTATAGATTTTGTTTTTGAGTCCAACAACCGTGTCAAGGATGGAGGTGCGAATTCAATTCAACAGTGTAAACAAGCATTATGTCCAGGCACTGTTGATAGTGTGGACTACAAGGAATCTTCACTTCTCAAGAACTGTGTTGAGTCTTCAACAGATAGTTCCTCAAGAGAAGGCTTAAAGTCCACATCATCAAAGGGAACTAATGAGAGTGGCTTATTGCAATATAGTATGACACAAACTTCAGTATTTCACTTGCCCAGTTTAGAAAAGGCTGAGACATTTGGTGCAAGTCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCAAGTATGAATGTACACACAGGAAACGTTTTATATTTTTGGGTAGGAAGGTCTTTCAATTATGATGCTTCACAGGTTCAGTTAGATAGTGATAGACAGTCTGATTTTCTTGGAGCAGTTGATTGGAATCAAATTGGTCATGATCTCCTTGCTCGGTTTAGTTTGCCAAAGGATACAATCATCAAGATTGTTAAAGAGAATGAAGAACCACAAGAATTCATTGCTTTGCTGACTGCAGCTGTCTATACCAATTTTTCAGGCTCTAATTTGATTTCCCCTGGGAAAAGAAATCCAGTGAGGTAA 2640 0.4246 MVGNDDARHLSASRKMFWRSASWSSARSAAAGNPSGESEKDFSDPNSAAENANWRFPPPPLTPRSQQNCKARSCLPPLQPLSIGRRSLDEWPKASSDDIGEWPQPPTTPGGRGNNNNNSSNSNNNGERLKLDLSSIQQNNPEHRNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKKNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSPSALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYERVQGPIIMIKEGEELASFWDAFSKFLPLMDTSGNKIESSRSSIKILPGERKVDSYDVDFEVFQKAITGGFVPPFASSEDEHETHLPARESNWSVLRRNKVTSANMKEFVSAPKLSFPRVYSDSMLCIHTSANSSPSSSVSSSPSLSSSSSPSYVSPDSISSDSSTHSKFLSELSPDSSSLVLSSIAVSPPLSNFTNLSLSSNSSSQPVSNSTDVRSVKLPHPCSQSASLPLKKPPTSLAERRGSLSKSLKLPLMNEKTQVIDKPSTFHGSREYGAILNGNISYLQQSDSIDFVFESNNRVKDGGANSIQQCKQALCPGTVDSVDYKESSLLKNCVESSTDSSSREGLKSTSSKGTNESGLLQYSMTQTSVFHLPSLEKAETFGASHLDSKAAFVIFSPSMNVHTGNVLYFWVGRSFNYDASQVQLDSDRQSDFLGAVDWNQIGHDLLARFSLPKDTIIKIVKENEEPQEFIALLTAAVYTNFSGSNLISPGKRNPVR. 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00241 879 Pfam Dual specificity phosphatase, catalytic domain 169 299 IPR000340 GO:0008138|GO:0016311
Seca2g00241 879 CDD DSP 162 296 - -
Seca2g00241 879 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 155 302 IPR029021 -
Seca2g00241 879 MobiDBLite consensus disorder prediction 580 621 - -
Seca2g00241 879 Gene3D Protein tyrosine phosphatase superfamily 135 303 IPR029021 -
Seca2g00241 879 SUPERFAMILY Actin depolymerizing proteins 763 858 - -
Seca2g00241 879 MobiDBLite consensus disorder prediction 18 32 - -
Seca2g00241 879 ProSitePatterns Tyrosine specific protein phosphatases active site. 245 255 IPR016130 GO:0016311|GO:0016791
Seca2g00241 879 ProSiteProfiles Dual specificity protein phosphatase domain profile. 161 303 IPR020422 GO:0006470|GO:0008138
Seca2g00241 879 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 220 281 IPR000387 GO:0016311|GO:0016791
Seca2g00241 879 PANTHER MKPA PROTEIN 12 856 - -
Seca2g00241 879 MobiDBLite consensus disorder prediction 513 541 - -
Seca2g00241 879 MobiDBLite consensus disorder prediction 18 127 - -
Seca2g00241 879 MobiDBLite consensus disorder prediction 580 605 - -
Seca2g00241 879 SMART dsp_5 161 300 IPR020422 GO:0006470|GO:0008138
Seca2g00241 879 Gene3D Severin 312 408 IPR029006 -
Seca2g00241 879 MobiDBLite consensus disorder prediction 108 127 - -
Seca2g00241 879 SUPERFAMILY Actin depolymerizing proteins 308 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00241 Seca-Chr2 3466838 3471471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00241 2 197 Protein tyrosine phosphatase (PTP) family AT3G55270 59.184 8.57e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00241 - - vum:124838930 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00241 2 3466838 3471471 Seca2g00241 2 3466838 3471471 ECH