Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g00239 | ATGGCTCCTTCAAAAGTGGACAATGCTAAAAAAGCTGATCCCAAGGCTCAGGCCTTGAAGACAGCCAAGGCTGTTAAATCAGGTGGCCAAGTGCTTAAGAAGAAAGCTAAAAAGATCAGGACATCAGTCACATTTCACCGGCCCAAGACATTGACGAAGGAAAGGAACCCTAAGTATCCCCGCATTAGTGCAACGCCAAGAAACAAGTTGGACCAGTATCAGATCCTTAAATTTCCTCTAACTACGGAGTCTGCAATGAAGAAGATTGAGGATAACAACACACTGGTTTTTATTGTTGACATCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCAGATGGAACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAACAAAATTGGTATCATCTAA | 468 | 0.4167 | MAPSKVDNAKKADPKAQALKTAKAVKSGGQVLKKKAKKIRTSVTFHRPKTLTKERNPKYPRISATPRNKLDQYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII. | 156 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g00239 | 155 | Pfam | Ribosomal protein L23, N-terminal domain | 15 | 64 | IPR005633 | - | |
Seca2g00239 | 155 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 73 | 148 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g00239 | 155 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Seca2g00239 | 155 | ProSitePatterns | Ribosomal protein L23 signature. | 133 | 148 | IPR001014 | GO:0019843 | |
Seca2g00239 | 155 | FunFam | 60S ribosomal protein L23a | 34 | 155 | - | - | |
Seca2g00239 | 155 | Pfam | Ribosomal protein L23 | 75 | 137 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g00239 | 155 | Gene3D | - | 36 | 155 | IPR012677 | - | |
Seca2g00239 | 155 | PANTHER | 60S RIBOSOMAL PROTEIN L23A | 7 | 155 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g00239 | 155 | NCBIfam | 50S ribosomal protein L23 | 79 | 155 | IPR019985 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g00239 | 155 | Hamap | 50S ribosomal protein L23 [rplW]. | 75 | 155 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g00239 | Seca-Chr2 | 3448504 | 3450462 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g00239 | 1 | 155 | Cytoplasmic Ribosomal Protein Gene Family | AT2G39460 | 88.387 | 1.17e-69 | 205 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g00239 | K02893 | - | gmx:100777933 | 287.345 |