Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00235 ATGATGATATCGAGGGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAGCCGCTGACGCCGGTTTCGGAGGTGTCAGAGCCGCCGGAGTCGCCGTCACCCTACCTGGACCTCGGCGCCGAGACCTCCGCGTCGCAGCAGGTGGAAGTCGAGGAAGATATGGAGGAACCGGAGGAGATCGAGCCGCCGCCAGCTGCGGTTCCTTTCTCGCGGCTCTTTAAATGCGCCGACCGGTTCGATTGGTTCCTCATGGCCGTCGGTTCCATCGCCGCCGCGGCTCACGGTACCGCGCTCGTTGTTTACTTGCACTACTTCGCTAAGATCATCCATGTTCTGCGGATGGATCCGCAAAAGCAGCAGGAGCAGTTTGACAGGTTCACAGAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGCTGCTGGTTGGATTGGTAAAGTTAAATTAGAGGTTTCATGTTGGATCTTGACTGGAGAACGACAGACTGCTGTCATCAGGTCCAAATATGTTCAAGTATTACTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAATAACGGAGACATTGTGAGTCAAGTATTGAGTGACGTGCTGCTTATCCAGTCCGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATAGCTTTGATAACGTTAGCCACGGGTCCTTTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATCAGGACATTGTATGCGTTTACAAATGAAACATTGGCCAAGTACTCATATGCAACATCACTCCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGAAAAAGCGCATGGTGGTGAAATTATAACAGCCCTGTTCGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACGAATTTCTATTCATTTGATCAAGGGAGAATAGCTGCTTATAGGCTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGATGGCACTACACCTGATTCTGTGCAAGGAAATATAGAGTTTCGAAATGTTTACTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGTGAAGTTCTTCTAGATGGAGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACGTTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGATTTGACTGAAGAACAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTACTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGAGTCTCTTGATCTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGGAACGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACCCATGATGAATTGTTGACCCTGGATGGCTTATATGCTGAGCTTCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGCAGACTGCAGCATTCCAAATAGAGAAGGATTCTTCAGCAAGTCATAGTTTCAATGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCAAGACCTCGAGATGGCATCTTTAACTTGCAAGAATCACCTAAAGTCAGGAGTCCACCACCTGAAAAGATGCTGGAAAATGGTCAGGCTTTGGATGCACCTGATAAGGAACCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAAATTGATGTACAATCTGTGCATCGACAAAAATCAAATGATTCTGACCCAGAATCCCCTGTTTCACCTCTTCTAACATCTGATCCTAAAAGTGAACGCTCACATTCACAGACTTTTAGCAGACCACATAGTCATTCTGATGACGCTTCAGTTACAATGAGAGAAAAAAAGGATGCACGGCATCGAAAACCACCATCACTTCAGAAGCTTGCTGAGCTTAGTTTTACTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTTGTGGTGACAGCTTACTATAATATTGATAAGCAGCATCACTTAGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTACTTTGGTATCATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTCGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCATTTAGCAACCGGCTTTCCATATTTATACAGGACAGTGCCGCAGTTATTGTTGGTCTTCTCATTGGTGTTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCGATTCTCTGTATTTCTGCATTTGCCCAGAAGTTGTGGCTAGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTCAGAAACATATACACTGTAGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTCGCATTCGGATTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCGATATGTATAAAAAATGGTTACATGAATCCACCTACTGCGCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGAGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGGAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGACCTGAATTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGGTCAGGAAAAAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCGGGGCAAGTTTTACTGGATGGGAGGGATTTAAAGCTTTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAGCCTATTATCTTCTCAACAACAATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCACGTAGGGATGAGAGGTGTTGATTTAACCCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTGGTGCTGAAAAATGCACCTATCTTATTGTTGGATGAAGCGAGTTCATCAATTGAATCTGAGTCAAGCCGAGTAGTACAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCTCATAGAGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATTCATTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAAGCTTTGCGTCAGCATCGGCTTGTTTAG 4221 0.4281 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDLGAETSASQQVEVEEDMEEPEEIEPPPAAVPFSRLFKCADRFDWFLMAVGSIAAAAHGTALVVYLHYFAKIIHVLRMDPQKQQEQFDRFTELALTIVYIAVGVFAAGWIGKVKLEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHEKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTTPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLDLTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQESLDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKQTAAFQIEKDSSASHSFNEPSSPKMMKSPSLQRISNVSRPRDGIFNLQESPKVRSPPPEKMLENGQALDAPDKEPSIRRQDSFEMRLPELPKIDVQSVHRQKSNDSDPESPVSPLLTSDPKSERSHSQTFSRPHSHSDDASVTMREKKDARHRKPPSLQKLAELSFTEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYNIDKQHHLEREVDRWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGVLLHWRLALVAFATLPILCISAFAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKNGYMNPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKALRQHRLV. 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00235 1406 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 385 - -
Seca2g00235 1406 MobiDBLite consensus disorder prediction 749 817 - -
Seca2g00235 1406 FunFam ABC transporter B family member 20 70 412 - -
Seca2g00235 1406 CDD ABC_6TM_Pgp_ABCB1_D2_like 829 1140 - -
Seca2g00235 1406 Gene3D ABC transporter type 1, transmembrane domain 70 662 IPR036640 GO:0005524|GO:0016020
Seca2g00235 1406 FunFam ABC transporter B family member 20 400 647 - -
Seca2g00235 1406 MobiDBLite consensus disorder prediction 670 736 - -
Seca2g00235 1406 SMART AAA_5 437 616 IPR003593 GO:0016887
Seca2g00235 1406 SMART AAA_5 1184 1371 IPR003593 GO:0016887
Seca2g00235 1406 Gene3D - 400 647 IPR027417 -
Seca2g00235 1406 MobiDBLite consensus disorder prediction 749 767 - -
Seca2g00235 1406 Pfam ABC transporter 1175 1323 IPR003439 GO:0005524
Seca2g00235 1406 Coils Coil 256 276 - -
Seca2g00235 1406 Gene3D - 1155 1394 IPR027417 -
Seca2g00235 1406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1146 1393 IPR027417 -
Seca2g00235 1406 MobiDBLite consensus disorder prediction 768 785 - -
Seca2g00235 1406 FunFam ABC transporter B family member 20 1147 1396 - -
Seca2g00235 1406 PANTHER ABC TRANSPORTER B FAMILY 48 647 IPR039421 -
Seca2g00235 1406 SUPERFAMILY ABC transporter transmembrane region 821 1142 IPR036640 GO:0005524|GO:0016020
Seca2g00235 1406 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g00235 1406 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1157 1394 IPR003439 GO:0005524
Seca2g00235 1406 MobiDBLite consensus disorder prediction 670 704 - -
Seca2g00235 1406 Gene3D ABC transporter type 1, transmembrane domain 773 1000 IPR036640 GO:0005524|GO:0016020
Seca2g00235 1406 Gene3D ABC transporter type 1, transmembrane domain 1006 1154 IPR036640 GO:0005524|GO:0016020
Seca2g00235 1406 SUPERFAMILY ABC transporter transmembrane region 69 385 IPR036640 GO:0005524|GO:0016020
Seca2g00235 1406 MobiDBLite consensus disorder prediction 786 817 - -
Seca2g00235 1406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 644 IPR027417 -
Seca2g00235 1406 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 645 IPR003439 GO:0005524
Seca2g00235 1406 Pfam ABC transporter transmembrane region 839 1103 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g00235 1406 Pfam ABC transporter transmembrane region 86 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g00235 1406 FunFam ABC transporter B family member 6 774 1002 - -
Seca2g00235 1406 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 834 1126 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g00235 1406 FunFam ABC transporter B family member 6 1004 1154 - -
Seca2g00235 1406 MobiDBLite consensus disorder prediction 18 60 - -
Seca2g00235 1406 Pfam ABC transporter 431 575 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00235 Seca-Chr2 3427366 3438030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00235 53 699 Calmodulin-binding Proteins AT2G36910 42.901 4.47e-167 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00235 K05658 - gmx:100789116 2541.53