Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00232 ATGGCGGATACAGTTGTAGTGTTCATGATAGAGAAATTGACGAGGCTGCTTGCGGAGGAAGCTAAACTGCTTAGTGGCGTTCGTGATAAAATCACGTCGTTGCAAAGTGAGCTCAAGTTCATGAACGTTTTTCTCAAAAATTCCCAAGGGAAGCGGAAACAACACGATATAGTGGATGAAGTGGTGAGCCAAATCAGAGATGTTGCACATGAAGTCGAAGACGTCATCGACACTTACGTTTCCCACATGATCAAACACAAAAGGAGAACCGCCGTGGAGAGAATTGTCCGCGGCGGCGGCATCGACCACGCTTCCATGCTTCACGCCCTCGCCGGCAGGATAGAGAGGATCAAAACCACCATCAACGAAATCTACCACAACAAACTCAAATATGGCATTGAAGAAGGTAGTAGTGCTCAGGCAATAATTGCACATCAAGCAGCAGAGTCACTACGAAGGAGAAGAAGGGAGGTGGAGGAAGAAGAGGTAGTGGGGTTTGTGCATGACTCTAGAGTTGTGATTAAGCAACTTGTGGAAAACGATTCATGTGCACGCCTACATGTTGTTTCCATAATTGGCATGGGTGGGTTGGGCAAGACCACCCTTGCCCGCAAGATATATAACAGTAATCGTGTCAAGAATTTGTTTCCTTCTCGTGCATGGGGTTATGTTTCTAACGATTATAGACCCAAAGAGTTTTTCTTGAGCCTTCTCAAGTGTCTCTTGTCAACTTCTAAATACAATGATTTATTCAAGAAAAGAGATCAATTAACTGAAGATGACAAACCTATAACCGAGGAGGAACTGAAGATGAAGGTAAGGAAATGCCTGAACAAGAAGAAGTATTTGGTAGTGGTTGATGATGTTTGGCAAACTCAAGTATGGAAGGATGTTAAAGGTGCTTTCCCTGATGACAATAATGGGAGTAGAATATTGATAACTAGCCGTTCAAAGGAGGTGGCTTCTTGTACAGGGTTAACTACCCTTCCTTACTATCTTCCTTTCCTTGGTAAAGAAGAAAGTTGGGAGCTTTTATCAAAGAAGGTGTTTTTGGGAGAAGAATGTCCTCCTGAATTGGTGCCATTAGGGAAATTGATTGCTGAAAGTTGTGATGGGTTGCCACTTGCTATCATTGTCATGGCAGGGATTCTAGCAAACAAGAAATCAGAAAGGGATTGGTCCAGAATCAAGGACCATGTGAATTGGCATCTTGCTAGGGATGAGACTAAAGTGAGGGATATATTGAAACTCAGCTATGATAGCTTGCCTTCAAGGTTGAAACCTTGTTTTCTGTATTTTGGCATCTACCCTGAAGACTATGAGATCCCTGTCAAGCAATTGACCCAACTATGGATATCAGAAGGGTTGATACAAGAAGATTCTAGAATTCCCAATCCACCACAACTAGAATATGTTGTTGAAGAGTACTTAGATGAGCTTGTGGATCGTAGCTTAGTGCAAGTGGCAAGTAGGAGGAGTGATGGAGGTGTCAAAACATGTCGGATTCATGATCTTCTTCGAGACCTCTGCATATTTGAAAGCAGAGATGACAAGTTCTTTGAGGTTTGTGGAGAAATTGATGTCCAAAACCAAATTAGTAGTCCTCGCAGGTTGTCCCTCCATGGCACATTGTTCCATTTCTCTTCATCAACATTGTCTGACTACTCAATCTCAGGTACACGTTCCTTGTTATGCTTTGGCCAAGAAGTGTACAAGGTTAAACCAAACCATTGGAGATGGCTTCTCAAAAGCTTCAAGTTGGCTCGTGTGCTTGATCTAGGAAGAATGAATGTTAATTCATTACCTAGTGATTTAGAGGAGCTTATTCATCTAAGGTACTTAAGAATACACTCATACAAGCTCCAAACTATTCCATCTTCTATATGCAGCCTTTGGAATCTAGAAACTCTTGATTTGAGGGGTTCACCTATAAAGGCATTCTCTCGTGAAATGTGGCATCTCAAGCGACTAAGGCACCTTCTTATGTTTGGACCGGTGGCATTTCCAAACATGTCATCATCAGATAGTAATAAAACAATGCCAAATCTTCAAACACTTTCAACTGTGGCTCTTGATCCAGACACATCATCCTTAATTGGCAACCGTAGATTCCCCAAGTTGACAAAGTTGGGTTTATACTATGAAAAACGTGACAAGTGTCATCCTCGTATACAATTACAAAGCCTGCATCACTTAAACCATCTTTGCACCCTCAAAGTGATTGGCACTTCAGAAATTCCACCGCTTGCAAATGTGTTCCCCTCAAATGTGACCAAGATAACCATAACCAAATTCGGTTTCTTCAACTCAAATGCCATGAATACACTAGGGAAGCTTACTAACCTTCAAATTTTAAAGCTTTCATTGCAGAAAAATGATAATAGTTTTGACATTCATTGTGCTAATGGAGGGTTCTTAAAGCTTCAAGTGTTTGAGATGGTAGGAATCAATGTCAAAAGGTGGACACTAGACAAAGGATCAATGCCACGTTTTCAATGTTTGGTCGTTAAAAGCTGTAAATCATTGACTGAGCTTCCAAAAGAACTCTGGTCTTTGACTAGCTTACGAGAAGTGCAAGTTTGGTGGCCCTGCACAGAATTGGCAAACCAGTTGCAAAACTTGAAGCTGAAGAATATTGGGTGCAAGCTCAATGTTTATCCTCACCCAACCAATGAAGAACTAGACTTTGTGTAA 2694 0.4157 MADTVVVFMIEKLTRLLAEEAKLLSGVRDKITSLQSELKFMNVFLKNSQGKRKQHDIVDEVVSQIRDVAHEVEDVIDTYVSHMIKHKRRTAVERIVRGGGIDHASMLHALAGRIERIKTTINEIYHNKLKYGIEEGSSAQAIIAHQAAESLRRRRREVEEEEVVGFVHDSRVVIKQLVENDSCARLHVVSIIGMGGLGKTTLARKIYNSNRVKNLFPSRAWGYVSNDYRPKEFFLSLLKCLLSTSKYNDLFKKRDQLTEDDKPITEEELKMKVRKCLNKKKYLVVVDDVWQTQVWKDVKGAFPDDNNGSRILITSRSKEVASCTGLTTLPYYLPFLGKEESWELLSKKVFLGEECPPELVPLGKLIAESCDGLPLAIIVMAGILANKKSERDWSRIKDHVNWHLARDETKVRDILKLSYDSLPSRLKPCFLYFGIYPEDYEIPVKQLTQLWISEGLIQEDSRIPNPPQLEYVVEEYLDELVDRSLVQVASRRSDGGVKTCRIHDLLRDLCIFESRDDKFFEVCGEIDVQNQISSPRRLSLHGTLFHFSSSTLSDYSISGTRSLLCFGQEVYKVKPNHWRWLLKSFKLARVLDLGRMNVNSLPSDLEELIHLRYLRIHSYKLQTIPSSICSLWNLETLDLRGSPIKAFSREMWHLKRLRHLLMFGPVAFPNMSSSDSNKTMPNLQTLSTVALDPDTSSLIGNRRFPKLTKLGLYYEKRDKCHPRIQLQSLHHLNHLCTLKVIGTSEIPPLANVFPSNVTKITITKFGFFNSNAMNTLGKLTNLQILKLSLQKNDNSFDIHCANGGFLKLQVFEMVGINVKRWTLDKGSMPRFQCLVVKSCKSLTELPKELWSLTSLREVQVWWPCTELANQLQNLKLKNIGCKLNVYPHPTNEELDFV. 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00232 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 433 IPR027417 -
Seca2g00232 897 Coils Coil 141 161 - -
Seca2g00232 897 PANTHER DISEASE RESISTANCE PROTEIN RP 33 834 IPR044974 GO:0006952
Seca2g00232 897 SUPERFAMILY L domain-like 492 864 - -
Seca2g00232 897 CDD RX-CC_like 2 124 IPR038005 -
Seca2g00232 897 PRINTS Disease resistance protein signature 276 290 - -
Seca2g00232 897 PRINTS Disease resistance protein signature 188 203 - -
Seca2g00232 897 PRINTS Disease resistance protein signature 629 645 - -
Seca2g00232 897 PRINTS Disease resistance protein signature 370 384 - -
Seca2g00232 897 Pfam Rx N-terminal domain 5 89 IPR041118 -
Seca2g00232 897 Gene3D Ribonuclease Inhibitor 558 893 IPR032675 -
Seca2g00232 897 Pfam NB-ARC domain 172 420 IPR002182 GO:0043531
Seca2g00232 897 Gene3D - 335 423 IPR042197 -
Seca2g00232 897 Gene3D - 141 326 IPR027417 -
Seca2g00232 897 Gene3D - 5 121 - -
Seca2g00232 897 FunFam Probable disease resistance protein At1g61300 145 327 - -
Seca2g00232 897 FunFam Probable disease resistance protein At1g63360 419 512 - -
Seca2g00232 897 Gene3D - 424 511 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00232 Seca-Chr2 3406507 3410214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00232 186 509 WRKY Transcription Factor Family AT5G45050 24.012 2.82e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00232 - - gmx:100780593 970.689