Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00231 ATGAAGAGAGAAAGAGATCATCATCAGGTTGATAGCATAACCATGGCAAATTATTTGATGTTTCTTTCTCGTGGTGATCAATTTGAAGGCAGCAGCAGTAGCACCTCCTATAACAGTCGTGTGTTTGAATGCAAGACATGTAATAGGCAATTCCCTTCATTTCAAGCACTTGGTGGACACAGGGCTAGTCACAAGAAGCCAAGGTTGGTGGCAGAGAATGGAGACATGATGATGGATGGCCTTGTTGGTTCACCACCAAAGCCTAAAACTCATGAGTGTTCCATTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTGGGTGGTCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACATCACTATGAGTAATAGTAGTGGTGGTGGTGGTAGCAGCAGTCTTGATTCTTCATCACCAAACATGAAAGCTGCTGGTAGCAACAAAAGATCATCATCAGTTTTGGCTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCTAACTGCCTTGGGTGATTATTTGTATTGA 558 0.4229 MKRERDHHQVDSITMANYLMFLSRGDQFEGSSSSTSYNSRVFECKTCNRQFPSFQALGGHRASHKKPRLVAENGDMMMDGLVGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNITMSNSSGGGGSSSLDSSSPNMKAAGSNKRSSSVLALDLNLTPFENDLEFLKIGKLTALGDYLY. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00231 185 MobiDBLite consensus disorder prediction 120 150 - -
Seca2g00231 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Seca2g00231 185 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Seca2g00231 185 Pfam C2H2-type zinc finger 41 67 - -
Seca2g00231 185 Pfam C2H2-type zinc finger 91 115 - -
Seca2g00231 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Seca2g00231 185 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Seca2g00231 185 PANTHER ZINC FINGER PROTEIN ZAT5 10 167 - -
Seca2g00231 185 Gene3D Classic Zinc Finger 39 113 - -
Seca2g00231 185 SMART c2h2final6 42 64 IPR013087 -
Seca2g00231 185 SMART c2h2final6 91 113 IPR013087 -
Seca2g00231 185 SUPERFAMILY beta-beta-alpha zinc fingers 40 113 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00231 Seca-Chr2 3379582 3380139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00231 1 172 C2H2 Transcription Factor Family AT2G37430 45.763 5.41e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g00231 zf-C2H2_6 9.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00231 - - gmx:100781134 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00231 2 3379582 3380139 Seca2g00231 2 3379582 3380139 ECH