Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00221 ATGGACAATCTGAATGAAAAGTTAATTTTTAACATGATGCAAGACAAAGATAATAGGGATAATGTGTGTGAAGGTGAAACAGTAAATAATTTGAATTCCCCAAATGAAGATAATGTTTGTGCTGATGAGCTTGCTCCTGATGTGTACAAAAGGATTTCTGAGCTTACAGATGAGGATATTAGATTACTTGAGTTTGATTCTGAAAAAGATGGATATGAATTCTATAGTCAGTATGCTAAATTCAAAGGATTTGTTGTTAGGAAAGATGATGTTTATCGTAATCGCAATAACCTTATTACAATGAGGCAATTGGTATGTAACAGGCAGGGGGAAAGGAGTGAGAAGCATTTAAATAGGACAGATAGAGTTAGGGAAGCTAAGGCCATTACTCGTACCAATTGTCTTGCAAGGCTTCGATTGTACTTAGATAATAATAGTAGGAAGTGGAGGGTTGGTATGTTTGAGCCACAACACAATCATGAGCTAAATTCATACAAATATGGTACATTTGTTACCTGCTTATCATGGTTTGAGTGTTGTTGA 543 0.3517 MDNLNEKLIFNMMQDKDNRDNVCEGETVNNLNSPNEDNVCADELAPDVYKRISELTDEDIRLLEFDSEKDGYEFYSQYAKFKGFVVRKDDVYRNRNNLITMRQLVCNRQGERSEKHLNRTDRVREAKAITRTNCLARLRLYLDNNSRKWRVGMFEPQHNHELNSYKYGTFVTCLSWFECC. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00221 180 Pfam FAR1 DNA-binding domain 73 163 IPR004330 -
Seca2g00221 180 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00221 Seca-Chr2 3258849 3259391 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g00221 FAR1 3.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00221 - - ccaj:109792835 136.346