Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00218 ATGCAGGAAAAGGTCTTTACAATACAAGTACTCATCAATCAAATAGATGACACCTTTGGTTGGAGTTATATTGCATGTGAAAAATGCTTCAAGAAACTTCACGAAGGACAAAATGATTACTTATGCACTACATGTAACCATACATCCAAGTACCCAACCAGAAGGTACATGATACAAATGAAGGTTTCAGATAACACGGGATCTGCAAAGTTGACAATGTTTGATCGAGATGCTAAGCAACTACTGAACACAACAGCAGCTGAACTATTTTCCCAAGAAATTGAAAATGGTAAACAACTACCTCAAAAGATACAAAACCTCTGCAACCGCACCCTTATATTTGAAATCAAATTGACTGATTACAACCTAAAGCAAGGTTCTCACAATTACACAGTCTCTAAAACATTTGTCCCTAACAATAGCCTACATGATCAAGTTCTACAAAAAACAATCAAACAGGAACCATCTTCTCCACAAAGAGTATCATCTGATGAAGAACTATTATCAAGTGACCCACAAAAATCAGACAAAGGAAATTTAAAGAGGAACACATCCCAACAAACAGGTGACACATCGTCAGATGATGAGCCAATCTACAAGGGCCTCTCAAGAAAAAAAATAACAAAAAATAAACATCAAATAACATCATCAGATGAAGAGCCAATCTTTATTCACAGTTTGAAGACAAGGACTTCAAGGAAGAAAAAAAAAGTTACCCGCGGGTGA 726 0.3623 MQEKVFTIQVLINQIDDTFGWSYIACEKCFKKLHEGQNDYLCTTCNHTSKYPTRRYMIQMKVSDNTGSAKLTMFDRDAKQLLNTTAAELFSQEIENGKQLPQKIQNLCNRTLIFEIKLTDYNLKQGSHNYTVSKTFVPNNSLHDQVLQKTIKQEPSSPQRVSSDEELLSSDPQKSDKGNLKRNTSQQTGDTSSDDEPIYKGLSRKKITKNKHQITSSDEEPIFIHSLKTRTSRKKKKVTRG. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00218 241 Gene3D - 1 153 IPR012340 -
Seca2g00218 241 SUPERFAMILY Nucleic acid-binding proteins 5 153 IPR012340 -
Seca2g00218 241 Pfam Replication factor-A C terminal domain 6 132 IPR013955 -
Seca2g00218 241 CDD RPA1_DBD_C 1 134 IPR047192 -
Seca2g00218 241 MobiDBLite consensus disorder prediction 211 227 - -
Seca2g00218 241 MobiDBLite consensus disorder prediction 151 241 - -
Seca2g00218 241 MobiDBLite consensus disorder prediction 151 166 - -
Seca2g00218 241 MobiDBLite consensus disorder prediction 179 194 - -
Seca2g00218 241 PANTHER OS03G0429900 PROTEIN 3 212 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00218 Seca-Chr2 3221469 3222349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00218 21 122 Core DNA Replication Machinery Family AT5G08020 29.907 2.33e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00218 - - lja:Lj6g3v1370730.1 214.927