Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00214 ATGTCAGAGGCTAGTCCTTATTCCATTGATATTGCAAAAATGAGAAATGCTCTTCTACCATCAGTTTCTCCACGGCTTCAATATGGAAATGATGGAGTTCAATTGGAAATTTTAGAAGGTTCCATGCAGATGAACGACTTAACTAGTCATTTTGTTAGAAATGACTTCAATATGGGGTCTAGAGAATTCAACAGTGACAACCAATTGAGCAAAGGAGTCTATACAGAGCCAAGTCTGTCTCAGTCTCTGATTTATGACAACAATCATCAACCAGGTAGTCTATATGCTGGCAAAGACATTTGTCTGCAATCATTGTTACTTGACAAGGACCCTTCAGTTTCTCAATATGAAGGAGTCAGTGGAAATGCCAGAAAACGTCCATTTGAGTATGTTGACAACATATCCTTGTGGAAAAAGATGAAAAAAAAATCAAAAAGCAAGATCACATTCTTGGAACCGAAATGGAATCATGTAGTAGAAGCTTCAGAGACAACCCCTCAGCAAAACTTGCATGTGCCTATGAGGAGAAATCAGAAGCTTAGTGATAAAGTAACAGCTCTACAAAAGTTGGTTTCACCTTTTGGCAAGACTGACACTGCCTCAGTTCTTCATGAGGCTTCTCTTCATATCAAACTTCTTCAAGCACAAATCCAGACTTTGTTTCAGATGATGAGTTTCTCTTATATTAGTACTGTTAAAGCTCCTCATACTCAGGAATGTGGGGACAAATTGCAGGTTGACCTAAAGAGCAGGGGACTATGTTTGGCTCCCATATCAATCACACAGAAAGTAACAATAGAAGACCAGATTCATCAGGCTTCTGCCTCAAGAACTATTCTGCGCTGA 846 0.3924 MSEASPYSIDIAKMRNALLPSVSPRLQYGNDGVQLEILEGSMQMNDLTSHFVRNDFNMGSREFNSDNQLSKGVYTEPSLSQSLIYDNNHQPGSLYAGKDICLQSLLLDKDPSVSQYEGVSGNARKRPFEYVDNISLWKKMKKKSKSKITFLEPKWNHVVEASETTPQQNLHVPMRRNQKLSDKVTALQKLVSPFGKTDTASVLHEASLHIKLLQAQIQTLFQMMSFSYISTVKAPHTQECGDKLQVDLKSRGLCLAPISITQKVTIEDQIHQASASRTILR. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00214 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Seca2g00214 281 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 262 - -
Seca2g00214 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 224 IPR036638 GO:0046983
Seca2g00214 281 CDD bHLH_AtbHLH_like 175 220 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00214 Seca-Chr2 3089970 3094597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00214 174 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.434 1.33e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00214 - - ccaj:109812405 378.252