Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00212 ATGGTGAACATGATGGAATGGCAGAAGCAGCGTTGGCATCCAAACGCAAACGCGGAAATGATGTACGTCAAGGTCATGACCGACGAACAACTCGAGACTCTACGGAAACAAATCGCGGTTTACGCAACCATCTGCGAACAACTCATCGAGATGCACAAAACACTCTCTGCTCACCAAGATCTAGCAGGGGTTAGGCTTGGTGGAATGTACTGTGACCCATTGATGGCATCTGGTGGCCACAAAATAAGTTCAAGGCAGAGGTGGACTCCAACTCCTGTGCAGCTTCAGATTCTGGAGCGGATATTTGATGCTGGAACTGGGACTCCTAGCAAGGAAAAGATCAAGGAGATAACTGCTGAGCTTAGCCAGCATGGTCAAATTTCTGAGACTAATGTGTATAATTGGTTCCAGAATAGGCGTGCTAGGTCCAAGAGGAAACAGCAGAGTGTGGCGCCTAGTAGTGTCAATGCTGAGTCGGAAGTTGAGACTGAGGTTGATTCTAAGGATAAGAAGACTAAACCAGATGAGTTTGTGTCCCAGCCGAGTGTGAATGCTGGGCCTGCTGAAAATTTGTGCTTCCAGAACCCTGAAGTGTGCTCTGATTTGCAGTACTTGAATCCAGAGTCAGATGGCAGTCTAAGATCCACCAGAAGTTTTGATCATGTGCCTGTCTTCGATGGGATGCTATCAAACTCGAGGAGCGATTATCTTACTGGAAAAATGGAAGCACCTGAGAGCTACAACTTATACCAGCCAGGAGGCGACTACAACATGGCAGGTTAA 783 0.4738 MVNMMEWQKQRWHPNANAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTLSAHQDLAGVRLGGMYCDPLMASGGHKISSRQRWTPTPVQLQILERIFDAGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQSVAPSSVNAESEVETEVDSKDKKTKPDEFVSQPSVNAGPAENLCFQNPEVCSDLQYLNPESDGSLRSTRSFDHVPVFDGMLSNSRSDYLTGKMEAPESYNLYQPGGDYNMAG. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00212 260 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Seca2g00212 260 MobiDBLite consensus disorder prediction 143 186 - -
Seca2g00212 260 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 258 IPR044559 GO:0003700
Seca2g00212 260 FunFam WUSCHEL-related homeobox 11 85 151 - -
Seca2g00212 260 SMART HOX_1 83 150 IPR001356 GO:0003677
Seca2g00212 260 CDD homeodomain 85 147 IPR001356 GO:0003677
Seca2g00212 260 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Seca2g00212 260 Gene3D - 87 151 - -
Seca2g00212 260 MobiDBLite consensus disorder prediction 161 176 - -
Seca2g00212 260 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00212 Seca-Chr2 3084849 3088164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00212 4 260 Wox Gene Family AT4G35550 52.941 2.99e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca2g00212 Homeodomain 3.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00212 - - gmx:100784355 432.565