Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00208 ATGGCTGACGGAATAGACATGTCCCTCGACGACATTATCAAGAGGTCCACCTCCTCCGCCGCAGTTCGCCGCCTACCCTACATTCCCGGGCCAGAACGCCGCTTCTCCGTTCGCAACCCGGCCAGACCGATGCCGTACTATATCCCTCAGGGAAGGCAAGTGTGGCGAGAAAGCATGGCTCCAGAAATGGTTTTGAATGATGGCGCTTCGGCTGAGACTGGGACCAAACTCTATATATCTAACTTGGACTATGGGGTTTCCAGTGAAGATATTAAGCTGCTTTTTTCTGAAGAGGGTGAGTTGAAAAGACACTGCATTCATCATGACAAGAGTGGGAGATCAAAAGGAACTGCTGAAGTTGTCTTTACAAGGCACTCTGATGCCTTGGCAGCCATCCAGAGATACAACAATATGAGGCTTGATGGAAAGCCATTGAAGATTGAGCTTGTTGGAACAAGTTTGGTTACTTCTCCTGTTATGCCCCTTTATCAAAATAGCTTACTGGGAAGACCAGATGATTTCATTGCAAGCGAACAAGGAAAGGTTGGAGGTAGCAGGTTCTATAATGGCTTTGCACGTGGCCCTCTTCCAAGGGGCCATAGAGAAGAGAAGGGTCGTATTCGGACGGTATCTTTTAGAGATCTTGATCATGGCTCGGAGAGGTATCACCACCGTCCAAGAGGCCACACAGAAGTGAAGGGCCATATTCCTAAAGTGTCTGTTAGAGATCTTGATGAAGACTTGGAGAGGTATCACTTAGAGGCTATGCAGATAAAAAAGAAACTGGAAAGTGAAATCATGATTGATAGCTAG 813 0.4723 MADGIDMSLDDIIKRSTSSAAVRRLPYIPGPERRFSVRNPARPMPYYIPQGRQVWRESMAPEMVLNDGASAETGTKLYISNLDYGVSSEDIKLLFSEEGELKRHCIHHDKSGRSKGTAEVVFTRHSDALAAIQRYNNMRLDGKPLKIELVGTSLVTSPVMPLYQNSLLGRPDDFIASEQGKVGGSRFYNGFARGPLPRGHREEKGRIRTVSFRDLDHGSERYHHRPRGHTEVKGHIPKVSVRDLDEDLERYHLEAMQIKKKLESEIMIDS. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00208 270 Gene3D - 58 231 IPR012677 -
Seca2g00208 270 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 257 - -
Seca2g00208 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 146 IPR000504 GO:0003723
Seca2g00208 270 CDD RRM_THOC4 75 149 - -
Seca2g00208 270 SMART rrm1_1 76 148 IPR000504 GO:0003723
Seca2g00208 270 SUPERFAMILY RNA-binding domain, RBD 68 152 IPR035979 GO:0003676
Seca2g00208 270 Coils Coil 241 261 - -
Seca2g00208 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00208 Seca-Chr2 3025061 3026872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00208 66 150 Eukaryotic Initiation Factors Gene Family AT2G23350 35.294 7.00e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00208 K12881 - gmx:100785926 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00208 2 3025061 3026872 Seca2g00208 2 3025061 3026872 ECH