Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00188 ATGGCCAAAAAATATGAGGGACATGCGATAGGAATTGACCTTGGCACAACCTACTCACGTGTTGCAGTATGGCAGGAACAAAACAATCGAGCAGAGATCATCCACAATGAACAAGGAAACGGAACAACTCCTTCTTTTGTTGCTTTCACTGACACTTTAGATGCTGCCAAAAATCAGGCATTCACCAATCCAACCAACACTGTGTTTGATATAAAGAGGTTGATTGGAAAGAAATATAGTGATTTCATTATTCAAAACGATATAATGTTGTGGCCCTTTAAGGTGATTCCCGGTGCTAATGATAAACCTACTATCGTTGTTAAGTACAAGGGGGTAGAAAAGCACCTTTTTGCAGAGGAAATCTCATCTATGCTCTTTACAAAGATGAGAGAGATTGCAGAGGCATATTTGGCATCACCAGTAAAGAATGCTGTTATCACTGTGCCTGCTTATTTCAATGATTCTCAACGAAAAGCTACCAAAGATGCCGGTGCTATTGCTGGCCTCAATGTTATGAGGATAATCAATGAGCCTACTGCTGCTGCTCTTGCATATGACCTTCAAAACAGAGTTGATTTTTTTGGAGAAAGAAATGTTTTCATCTTTGATCTTAGTGGTGGCTCTTTTGATGTGTCTCTTCTCACAATTAAGGGTGATAGGTTCCAAGTAAAGGCCACCGCTGGAGATACTCACCTTGGAGGAGAGGTTTTTGATAATAGAATGGTGAACCACTTTGTGAAGGAGTTCAAGAGGAAGAACAGAGTTGACATCAGTTGGAACCCAAAAGCCCTGAGGAGGCTGAGAAGTGAATGTGAGAGGGCAAAAAGGGTACTTTCATATGATACTGAGACCACAATTGAAATAACTTCTTTATGTCCAGGAATTGATTTCTGTTCACCACTCACCCGTGCTAAATTTGAGCAACTTAACATGGACCTCTTTACAAAGTGCATAGAGACAGTTGAGCAGTGTCTCACTGATGCTAAGATGGATAAGAGTGATGTTGATGATGTTGTACTTGTTGGTGGCTCTTCTAGAATTCCCAAAGTGCAGCAGCTGTTGCAGGATTTTTTCAATGGGAAGGATCTGTGCATGAGCATCAACCCTGATGAGGCTGTGGTTTATGGTGCTGCTGTCCAAGCTGCTTTGTTGAATGATGACAATAAGAAGGCTAATGCAATTAATGCTTTGGATGATTATCTTTGCGATATTAAAAAAGTAATGAAGGATAAGTATGTCAGTTCTAAGGTTACTACAATGGACAAAATTAAGATCAATTCTGCATTTATAAATGGAAAAAATTTGATTGGTGGTAACCAGCAGGAAAATATGCATGTGTTTGTGGACTGTTTAAGGGAGCTTAAGAGTATATTTGAATCCGCTATGGACAAGGTCCACTTTGCTTGGTCTGATGAGGATGAGGATTACTAA 1431 0.3997 MAKKYEGHAIGIDLGTTYSRVAVWQEQNNRAEIIHNEQGNGTTPSFVAFTDTLDAAKNQAFTNPTNTVFDIKRLIGKKYSDFIIQNDIMLWPFKVIPGANDKPTIVVKYKGVEKHLFAEEISSMLFTKMREIAEAYLASPVKNAVITVPAYFNDSQRKATKDAGAIAGLNVMRIINEPTAAALAYDLQNRVDFFGERNVFIFDLSGGSFDVSLLTIKGDRFQVKATAGDTHLGGEVFDNRMVNHFVKEFKRKNRVDISWNPKALRRLRSECERAKRVLSYDTETTIEITSLCPGIDFCSPLTRAKFEQLNMDLFTKCIETVEQCLTDAKMDKSDVDDVVLVGGSSRIPKVQQLLQDFFNGKDLCMSINPDEAVVYGAAVQAALLNDDNKKANAINALDDYLCDIKKVMKDKYVSSKVTTMDKIKINSAFINGKNLIGGNQQENMHVFVDCLRELKSIFESAMDKVHFAWSDEDEDY. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00188 476 FunFam Heat shock cognate 70 kDa protein 2 317 364 - -
Seca2g00188 476 FunFam heat shock 70 kDa protein-like 69 124 - -
Seca2g00188 476 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca2g00188 476 Gene3D - 190 364 - -
Seca2g00188 476 SUPERFAMILY Actin-like ATPase domain 8 187 IPR043129 -
Seca2g00188 476 Gene3D - 69 124 - -
Seca2g00188 476 Gene3D Actin; Chain A, domain 4 233 316 - -
Seca2g00188 476 ProSitePatterns Heat shock hsp70 proteins family signature 3. 338 352 IPR018181 -
Seca2g00188 476 FunFam Molecular chaperone DnaK 10 193 - -
Seca2g00188 476 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca2g00188 476 PRINTS 70kDa heat shock protein signature 38 50 - -
Seca2g00188 476 PRINTS 70kDa heat shock protein signature 144 164 - -
Seca2g00188 476 PRINTS 70kDa heat shock protein signature 367 387 - -
Seca2g00188 476 PRINTS 70kDa heat shock protein signature 207 217 - -
Seca2g00188 476 PRINTS 70kDa heat shock protein signature 335 351 - -
Seca2g00188 476 PANTHER HEAT SHOCK PROTEIN 70KDA 9 399 IPR013126 GO:0005524|GO:0140662
Seca2g00188 476 Pfam Hsp70 protein 9 389 IPR013126 GO:0005524|GO:0140662
Seca2g00188 476 FunFam Heat shock 70 kDa 233 316 - -
Seca2g00188 476 Gene3D - 10 382 - -
Seca2g00188 476 Gene3D - 385 467 IPR029048 -
Seca2g00188 476 SUPERFAMILY Actin-like ATPase domain 196 384 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00188 Seca-Chr2 2765246 2766805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00188 1 466 Calmodulin-binding Proteins AT5G02500 61.350 0.0 590