Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00175 ATGACAGACACTGACGATATTCAACCCCTTGTTTTTGACATTGGAACGTCATTGGTTAAGGCTGGTTTTGCTGGAGAAGACGCCCCATATGCTGTGTTTCCCAGCATCGTAGGTCATGTCCAGAAAGATGTATATGTTGGTGATGAGGCACTGTGTGAGTATGGTACTGTGACTCTCAAGTACCCCATTGAGCATGGATATGTAAGCAATTGGGACGATGTGGAAAATATTTTGGAGCATACGTTCTATAATGAACTTGGTGTTTCCCCAAAAGAGCATCCAATTTTGCTAAGTGACGCTCCTCTTAATCCCAGGGCCAACCGCGAGACCATGACCGAAATGATGTTTGAGGCTTTTAATACCCCCACTTTATGTATATGCACTAGTGCTATTCTTTCACTATATGCAAGTGGGCGTACCACTGGCATTGTGTTGGAGTCTGGTGATGGTGTCGGCCATGCAGTCCCTATCTATGAGGGTTGTGTCCTTCCACATGCCATCCAACGTCTTGATCTGGCTGGTGGTGACATCACTGATTTCTTGGTGAAAATTTTGAATAAAGGAGGGTATTCTTTTACCTCCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAAGAAAAGTTGGCTTATGTTTCCATTGACTATGAGCAAGAGCTGGTGAGAGCCAAGAGAAACAATTCCAAGAGCTATGAGTTGCCTGATGGGGAAGTAATCACTATTGGTGATGAGCGATTCAGATGTGCAGAGGCGTTGTTCCAACCATCCTTGATAGGAATGGAAAAAGCAGTGGGGATTCATGAGGCAACATACAACTCCATAATGAAATGTGATATTGATCTCAGGAGAGACCTTTATGGTAGTATTGTATTTTCTGGAGGAGCAACCATGTTCCCAGGTATCGTTGATAGAATGAGTAAGGAAATTACTCCTTTAGCCTCAGGTGGCAGTGGCACAAAAATCAAGGTTGTGGGGCCACCTGAGAGAGAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTCACCCGCTTTTACGGCCAGGTTTGTTCTGTTCCTAGCTTCACATAA 1071 0.4472 MTDTDDIQPLVFDIGTSLVKAGFAGEDAPYAVFPSIVGHVQKDVYVGDEALCEYGTVTLKYPIEHGYVSNWDDVENILEHTFYNELGVSPKEHPILLSDAPLNPRANRETMTEMMFEAFNTPTLCICTSAILSLYASGRTTGIVLESGDGVGHAVPIYEGCVLPHAIQRLDLAGGDITDFLVKILNKGGYSFTSSAEREIVRDMKEKLAYVSIDYEQELVRAKRNNSKSYELPDGEVITIGDERFRCAEALFQPSLIGMEKAVGIHEATYNSIMKCDIDLRRDLYGSIVFSGGATMFPGIVDRMSKEITPLASGGSGTKIKVVGPPEREYSVWIGGSILASLTRFYGQVCSVPSFT. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00175 356 Gene3D - 130 331 - -
Seca2g00175 356 SMART actin_3 7 355 IPR004000 -
Seca2g00175 356 FunFam actin, alpha sarcomeric/skeletal-like 263 331 - -
Seca2g00175 356 SUPERFAMILY Actin-like ATPase domain 5 145 IPR043129 -
Seca2g00175 356 Gene3D - 10 349 - -
Seca2g00175 356 PANTHER ACTIN 9 345 IPR004000 -
Seca2g00175 356 FunFam Actin, alpha skeletal muscle 172 261 - -
Seca2g00175 356 CDD NBD_sugar-kinase_HSP70_actin 10 173 - -
Seca2g00175 356 PRINTS Actin signature 226 242 IPR004000 -
Seca2g00175 356 PRINTS Actin signature 107 120 IPR004000 -
Seca2g00175 356 PRINTS Actin signature 28 37 IPR004000 -
Seca2g00175 356 PRINTS Actin signature 76 94 IPR004000 -
Seca2g00175 356 PRINTS Actin signature 132 151 IPR004000 -
Seca2g00175 356 Pfam Actin 5 345 IPR004000 -
Seca2g00175 356 Gene3D Actin; Chain A, domain 4 172 262 - -
Seca2g00175 356 FunFam Actin, alpha skeletal muscle 3 140 - -
Seca2g00175 356 SUPERFAMILY Actin-like ATPase domain 138 348 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00175 Seca-Chr2 2566520 2568950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00175 1 345 Cytoskeleton Gene Families AT3G12110 70.868 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00175 K10355 - gmx:100781831 505.753